1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g012190.3.1

Solyc05g012190.3.1


Description : Cell division control protein 48 homolog B OS=Arabidopsis thaliana (sp|q9zpr1|cd48b_arath : 724.0)


Gene families : OG0000169 (Archaeplastida) Phylogenetic Tree(s): OG0000169_tree ,
OG_05_0006219 (LandPlants) Phylogenetic Tree(s): OG_05_0006219_tree ,
OG_06_0007404 (SeedPlants) Phylogenetic Tree(s): OG_06_0007404_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g012190.3.1
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AT2G03670 CDC48B cell division cycle 48B 0.03 Archaeplastida
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.05 Archaeplastida
AT3G56690 CIP111 Cam interacting protein 111 0.04 Archaeplastida
Cpa|evm.model.tig00000525.10 No alias Cell division control protein 48 homolog C... 0.01 Archaeplastida
Cre09.g398550 No alias Cell division control protein 48 homolog C... 0.01 Archaeplastida
LOC_Os06g01980.1 No alias Cell division control protein 48 homolog C... 0.04 Archaeplastida
LOC_Os11g11340.1 No alias Calmodulin-interacting protein 111 OS=Arabidopsis... 0.04 Archaeplastida
Pp3c17_21090V3.1 No alias peroxin 6 0.04 Archaeplastida
Pp3c18_11480V3.1 No alias cell division cycle 48C 0.03 Archaeplastida
Pp3c21_20700V3.1 No alias cell division cycle 48B 0.02 Archaeplastida
Pp3c4_26860V3.1 No alias ATPase, AAA-type, CDC48 protein 0.02 Archaeplastida
Pp3c6_25280V3.1 No alias Cam interacting protein 111 0.03 Archaeplastida
Smo115678 No alias Protein translocation.peroxisome.importomer... 0.03 Archaeplastida
Smo173081 No alias Cell division control protein 48 homolog B... 0.02 Archaeplastida
Zm00001e021405_P001 No alias Calmodulin-interacting protein 111 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e035514_P002 No alias Cell division control protein 48 homolog C... 0.04 Archaeplastida
Zm00001e036688_P001 No alias Cell division control protein 48 homolog C... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 55 190
IPR003959 ATPase_AAA_core 326 458
No external refs found!