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  5. Solyc06g059960.4.1

Solyc06g059960.4.1


Description : class II/ASH1 histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0000350 (Archaeplastida) Phylogenetic Tree(s): OG0000350_tree ,
OG_05_0005295 (LandPlants) Phylogenetic Tree(s): OG_05_0005295_tree ,
OG_06_0007372 (SeedPlants) Phylogenetic Tree(s): OG_06_0007372_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g059960.4.1
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00244380 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
AT1G76710 SDG26, ASHH1 SET domain group 26 0.03 Archaeplastida
AT1G77300 LAZ2, CCR1,... histone methyltransferases(H3-K4 specific);histone... 0.1 Archaeplastida
AT5G42400 SDG25, ATXR7 SET domain protein 25 0.07 Archaeplastida
Cpa|evm.model.tig00001073.18 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Cre09.g392542 No alias Chromatin organisation.histone modifications.histone... 0.05 Archaeplastida
GSVIVT01008805001 No alias Chromatin organisation.histone modifications.histone... 0.12 Archaeplastida
Gb_04139 No alias class III/Trithorax histone methyltransferase component... 0.03 Archaeplastida
Gb_19296 No alias class II/ASH1 histone methyltransferase component of... 0.04 Archaeplastida
LOC_Os02g34850.1 No alias class II/ASH1 histone methyltransferase component of... 0.09 Archaeplastida
LOC_Os12g41900.1 No alias class III/Trithorax histone methyltransferase component... 0.03 Archaeplastida
MA_18041g0010 No alias class III/Trithorax histone methyltransferase component... 0.04 Archaeplastida
MA_91554g0010 No alias class II/ASH1 histone methyltransferase component of... 0.03 Archaeplastida
Mp1g17790.1 No alias class III/Trithorax histone methyltransferase component... 0.07 Archaeplastida
Mp6g20020.1 No alias class II/ASH1 histone methyltransferase component of... 0.02 Archaeplastida
Mp8g18560.1 No alias class II/ASH1 histone methyltransferase component of... 0.04 Archaeplastida
Pp3c1_33770V3.1 No alias histone methyltransferases(H3-K4 specific);histone... 0.05 Archaeplastida
Pp3c24_20920V3.1 No alias SET domain protein 25 0.06 Archaeplastida
Pp3c2_12540V3.1 No alias histone methyltransferases(H3-K4 specific);histone... 0.08 Archaeplastida
Zm00001e014806_P003 No alias class II/ASH1 histone methyltransferase component of... 0.05 Archaeplastida
Zm00001e033782_P001 No alias class II/ASH1 histone methyltransferase component of... 0.02 Archaeplastida
Zm00001e039307_P005 No alias class III/Trithorax histone methyltransferase component... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0018024 histone-lysine N-methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011124 Znf_CW 373 419
IPR006560 AWS_dom 496 530
IPR001214 SET_dom 544 650
No external refs found!