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  5. Solyc07g006360.1.1

Solyc07g006360.1.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001120 (LandPlants) Phylogenetic Tree(s): OG_05_0001120_tree ,
OG_06_0003795 (SeedPlants) Phylogenetic Tree(s): OG_06_0003795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g006360.1.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00198340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00040p00197990 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00056p00122930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00088p00040490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G34000 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G14320 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.04 Archaeplastida
AT3G18773 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G60220 ATL4, TL4 TOXICOS EN LEVADURA 4 0.03 Archaeplastida
AT3G61550 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT4G24015 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G40070 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01013145001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01023776001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01027524001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01028306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_41385 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g43120.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os02g54830.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os05g07140.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g50370.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g34550.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
LOC_Os12g40460.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_10435495g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_125507g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_46635g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9521306g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo448587 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g091770.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e007103_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015259_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e022175_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e041370_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 116 159
No external refs found!