Solyc07g032100.3.1

Description : subunit alpha of coat protein complex

Gene families : OG0002801 (Archaeplastida) Phylogenetic Tree(s): OG0002801_tree ,
OG_05_0002931 (LandPlants) Phylogenetic Tree(s): OG_05_0002931_tree ,
OG_06_0003184 (SeedPlants) Phylogenetic Tree(s): OG_06_0003184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g032100.3.1
Cluster	HCCA: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00220200	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.06	Archaeplastida
AMTR_s00186p00045360	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
AT1G62020	No alias	Coatomer, alpha subunit	0.2	Archaeplastida
AT2G21390	No alias	Coatomer, alpha subunit	0.22	Archaeplastida
Cpa\|evm.model.tig00000144.151	No alias	Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica	0.01	Archaeplastida
Cpa\|evm.model.tig00000144.152	No alias	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Cre13.g565850	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	Archaeplastida
GSVIVT01009813001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.12	Archaeplastida
Gb_09624	No alias	subunit alpha of coat protein complex	0.1	Archaeplastida
Gb_15817	No alias	subunit alpha of coat protein complex	0.08	Archaeplastida
LOC_Os03g50340.1	No alias	subunit alpha of coat protein complex	0.13	Archaeplastida
LOC_Os03g50350.1	No alias	subunit alpha of coat protein complex	0.13	Archaeplastida
LOC_Os09g04110.1	No alias	subunit alpha of coat protein complex	0.11	Archaeplastida
MA_10428405g0010	No alias	subunit alpha of coat protein complex	0.05	Archaeplastida
MA_10429054g0020	No alias	subunit alpha of coat protein complex	0.06	Archaeplastida
MA_10429054g0030	No alias	Coatomer subunit alpha-1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Mp3g00050.1	No alias	subunit alpha of coat protein complex	0.12	Archaeplastida
Pp3c11_12600V3.1	No alias	Coatomer, alpha subunit	0.09	Archaeplastida
Pp3c1_12990V3.1	No alias	Coatomer, alpha subunit	0.14	Archaeplastida
Pp3c2_24120V3.1	No alias	Coatomer, alpha subunit	0.1	Archaeplastida
Smo77651	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
Smo85610	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.05	Archaeplastida
Zm00001e005441_P001	No alias	subunit alpha of coat protein complex	0.15	Archaeplastida
Zm00001e012192_P001	No alias	subunit alpha of coat protein complex	0.18	Archaeplastida
Zm00001e016505_P002	No alias	subunit alpha of coat protein complex	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Neighborhood
CC	GO:0000139	Golgi membrane	IEP	Neighborhood
CC	GO:0000145	exocyst	IEP	Neighborhood
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Neighborhood
MF	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	IEP	Neighborhood
MF	GO:0004470	malic enzyme activity	IEP	Neighborhood
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Neighborhood
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Neighborhood
MF	GO:0004659	prenyltransferase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0005801	cis-Golgi network	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006486	protein glycosylation	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008318	protein prenyltransferase activity	IEP	Neighborhood
MF	GO:0008373	sialyltransferase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016229	steroid dehydrogenase activity	IEP	Neighborhood
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016615	malate dehydrogenase activity	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
CC	GO:0017119	Golgi transport complex	IEP	Neighborhood
BP	GO:0018342	protein prenylation	IEP	Neighborhood
MF	GO:0019107	myristoyltransferase activity	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
CC	GO:0030118	clathrin coat	IEP	Neighborhood
CC	GO:0030125	clathrin vesicle coat	IEP	Neighborhood
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Neighborhood
CC	GO:0030132	clathrin coat of coated pit	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0043413	macromolecule glycosylation	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
BP	GO:0070085	glycosylation	IEP	Neighborhood
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Neighborhood
BP	GO:0097354	prenylation	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
BP	GO:1901264	carbohydrate derivative transport	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
MF	GO:1901567	fatty acid derivative binding	IEP	Neighborhood
MF	GO:1901681	sulfur compound binding	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006692	Coatomer_WD-assoc_reg	341	768
IPR001680	WD40_repeat	84	121
IPR001680	WD40_repeat	198	231
IPR001680	WD40_repeat	241	276
IPR001680	WD40_repeat	45	79
IPR001680	WD40_repeat	126	163
IPR010714	Coatomer_asu_C	815	1219

External Links

No external refs found!

Solyc07g032100.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation