1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g067060.2.1

Solyc08g067060.2.1


Description : Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana (sp|q9sv46|pp282_arath : 714.0)


Gene families : OG0017611 (Archaeplastida) Phylogenetic Tree(s): OG0017611_tree ,
OG_05_0017379 (LandPlants) Phylogenetic Tree(s): OG_05_0017379_tree ,
OG_06_0016908 (SeedPlants) Phylogenetic Tree(s): OG_06_0016908_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g067060.2.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AT2G39230 LOJ LATERAL ORGAN JUNCTION 0.05 Archaeplastida
AT3G54980 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
GSVIVT01035807001 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006474 N-terminal protein amino acid acetylation IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Neighborhood
BP GO:0018206 peptidyl-methionine modification IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Neighborhood
CC GO:0031417 NatC complex IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 509 557
IPR002885 Pentatricopeptide_repeat 789 835
IPR002885 Pentatricopeptide_repeat 439 479
IPR002885 Pentatricopeptide_repeat 582 628
IPR002885 Pentatricopeptide_repeat 722 767
IPR002885 Pentatricopeptide_repeat 335 383
IPR002885 Pentatricopeptide_repeat 637 695
IPR002885 Pentatricopeptide_repeat 235 262
IPR002885 Pentatricopeptide_repeat 410 430
IPR002885 Pentatricopeptide_repeat 163 191
IPR002885 Pentatricopeptide_repeat 303 331
No external refs found!