Solyc09g008850.3.1

Description : transcription factor (Trihelix)

Gene families : OG0003336 (Archaeplastida) Phylogenetic Tree(s): OG0003336_tree ,
OG_05_0002790 (LandPlants) Phylogenetic Tree(s): OG_05_0002790_tree ,
OG_06_0008250 (SeedPlants) Phylogenetic Tree(s): OG_06_0008250_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g008850.3.1
Cluster	HCCA: Cluster_202

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01033748001	No alias	RNA biosynthesis.transcriptional activation.Trihelix...	0.05	Archaeplastida
Zm00001e008247_P005	No alias	transcription factor (Trihelix)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
MF	GO:0008237	metallopeptidase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001048	Asp/Glu/Uridylate_kinase	290	505

External Links

No external refs found!