Solyc11g066790.2.1


Description : chromatin remodeling factor (Rad5)


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0003266 (LandPlants) Phylogenetic Tree(s): OG_05_0003266_tree ,
OG_06_0004582 (SeedPlants) Phylogenetic Tree(s): OG_06_0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g066790.2.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00013990 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AT3G20010 No alias SNF2 domain-containing protein / helicase... 0.07 Archaeplastida
AT5G22750 RAD5 DNA/RNA helicase protein 0.03 Archaeplastida
GSVIVT01027728001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01031410001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
LOC_Os02g32570.1 No alias chromatin remodeling factor (Rad5) 0.07 Archaeplastida
LOC_Os04g09800.1 No alias chromatin remodeling factor (Rad5) 0.04 Archaeplastida
MA_111652g0010 No alias chromatin remodeling factor (Rad5) 0.05 Archaeplastida
MA_218767g0010 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_32772g0010 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_4534g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.05 Archaeplastida
Zm00001e035695_P004 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0008915 lipid-A-disaccharide synthase activity IEP Neighborhood
BP GO:0009245 lipid A biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046493 lipid A metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901269 lipooligosaccharide metabolic process IEP Neighborhood
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR014905 HIRAN 158 265
IPR001650 Helicase_C 906 1018
IPR000330 SNF2_N 394 783
No external refs found!