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Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component
Gene families : OG0004975 (Archaeplastida) Phylogenetic Tree(s): OG0004975_tree ,
OG_05_0004978 (LandPlants) Phylogenetic Tree(s): OG_05_0004978_tree ,
OG_06_0004361 (SeedPlants) Phylogenetic Tree(s): OG_06_0004361_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01008490001 | |
| Cluster | HCCA: Cluster_236 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00005p00203240 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | Archaeplastida | |
| AMTR_s00354p00009120 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.08 | Archaeplastida | |
| AT3G48500 | PTAC10, PDE312 | Nucleic acid-binding, OB-fold-like protein | 0.12 | Archaeplastida | |
| Cre07.g348500 | No alias | No description available | 0.02 | Archaeplastida | |
| Gb_30753 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
| Gb_30755 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| Gb_30756 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| LOC_Os01g67570.1 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
| MA_10428299g0010 | No alias | no hits & (original description: none) | 0.08 | Archaeplastida | |
| MA_10435142g0010 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
| MA_14025g0020 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.07 | Archaeplastida | |
| Mp4g08250.1 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.08 | Archaeplastida | |
| Pp3c18_13570V3.1 | No alias | Nucleic acid-binding, OB-fold-like protein | 0.08 | Archaeplastida | |
| Smo438805 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | Archaeplastida | |
| Solyc03g111050.3.1 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.11 | Archaeplastida | |
| Zm00001e028549_P001 | No alias | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
| MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008237 | metallopeptidase activity | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| CC | GO:0009507 | chloroplast | IEP | Neighborhood |
| CC | GO:0009536 | plastid | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |