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  5. GSVIVT01011408001

GSVIVT01011408001


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component


Gene families : OG0003989 (Archaeplastida) Phylogenetic Tree(s): OG0003989_tree ,
OG_05_0007105 (LandPlants) Phylogenetic Tree(s): OG_05_0007105_tree ,
OG_06_0007296 (SeedPlants) Phylogenetic Tree(s): OG_06_0007296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011408001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00079920 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.22 Archaeplastida
AT5G48600 ATCAP-C, ATSMC4,... structural maintenance of chromosome 3 0.04 Archaeplastida
Cpa|evm.model.tig00000711.41 No alias Cell cycle.mitosis and meiosis.chromatin... 0.07 Archaeplastida
Cre12.g493400 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 Archaeplastida
Gb_03310 No alias component CAP-C/SMC4 of condensin I/II complex 0.19 Archaeplastida
LOC_Os05g41750.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.12 Archaeplastida
MA_10432810g0010 No alias no hits & (original description: none) 0.16 Archaeplastida
MA_317249g0010 No alias component CAP-C/SMC4 of condensin I/II complex 0.21 Archaeplastida
MA_7369647g0010 No alias Structural maintenance of chromosomes protein 4... 0.15 Archaeplastida
MA_82161g0010 No alias Structural maintenance of chromosomes protein 4... 0.17 Archaeplastida
MA_9366726g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Mp5g06430.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.17 Archaeplastida
Pp3c18_16050V3.1 No alias structural maintenance of chromosome 3 0.08 Archaeplastida
Solyc02g087980.3.1 No alias component CAP-C/SMC4 of condensin I/II complex 0.17 Archaeplastida
Zm00001e032031_P001 No alias component CAP-C/SMC4 of condensin I/II complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 29 1237
IPR010935 SMC_hinge 559 675
No external refs found!