GSVIVT01017658001

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.alpha-L-arabinofuranosidase activities.bifunctional BXL-type alpha-L-arabinofuranosidase and beta-D-xylosidase

Gene families : OG0000435 (Archaeplastida) Phylogenetic Tree(s): OG0000435_tree ,
OG_05_0000257 (LandPlants) Phylogenetic Tree(s): OG_05_0000257_tree ,
OG_06_0004246 (SeedPlants) Phylogenetic Tree(s): OG_06_0004246_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01017658001
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00246460	evm_27.TU.AmTr_v1...	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.04	Archaeplastida
AMTR_s00045p00064060	evm_27.TU.AmTr_v1...	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.04	Archaeplastida
AMTR_s00057p00049120	evm_27.TU.AmTr_v1...	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.05	Archaeplastida
AMTR_s00068p00088730	evm_27.TU.AmTr_v1...	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.04	Archaeplastida
AT1G02640	ATBXL2, BXL2	beta-xylosidase 2	0.02	Archaeplastida
AT3G19620	No alias	Glycosyl hydrolase family protein	0.02	Archaeplastida
GSVIVT01009003001	No alias	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.05	Archaeplastida
GSVIVT01017656001	No alias	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.03	Archaeplastida
GSVIVT01017660001	No alias	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.01	Archaeplastida
Gb_19020	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
Gb_26639	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
Gb_32463	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
Gb_34864	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
LOC_Os01g19220.1	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.02	Archaeplastida
LOC_Os02g51620.1	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
LOC_Os04g54810.1	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
LOC_Os11g18730.1	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.04	Archaeplastida
LOC_Os11g44950.2	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.04	Archaeplastida
MA_102349g0010	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.02	Archaeplastida
MA_10436568g0020	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.02	Archaeplastida
MA_140124g0010	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.03	Archaeplastida
MA_791061g0010	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.05	Archaeplastida
Mp5g21580.1	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.02	Archaeplastida
Smo419541	No alias	Cell wall.pectin.rhamnogalacturonan I.modification and...	0.02	Archaeplastida
Solyc01g079570.3.1	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.05	Archaeplastida
Zm00001e008876_P002	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.02	Archaeplastida
Zm00001e026163_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e037605_P001	No alias	bifunctional alpha-L-arabinofuranosidase and...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Neighborhood
MF	GO:0004506	squalene monooxygenase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR026891	Fn3-like	661	729
IPR001764	Glyco_hydro_3_N	133	375
IPR002772	Glyco_hydro_3_C	415	620

External Links

No external refs found!

GSVIVT01017658001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation