AT1G48460

Description : unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Gene families : OG0007924 (Archaeplastida) Phylogenetic Tree(s): OG0007924_tree ,
OG_05_0006264 (LandPlants) Phylogenetic Tree(s): OG_05_0006264_tree ,
OG_06_0006936 (SeedPlants) Phylogenetic Tree(s): OG_06_0006936_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G48460
Cluster	HCCA: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc04g079740.3.1	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009536	plastid	IDA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	Neighborhood
BP	GO:0000018	regulation of DNA recombination	IEP	Neighborhood
MF	GO:0000217	DNA secondary structure binding	IEP	Neighborhood
CC	GO:0000228	nuclear chromosome	IEP	Neighborhood
CC	GO:0000229	cytoplasmic chromosome	IEP	Neighborhood
MF	GO:0000400	four-way junction DNA binding	IEP	Neighborhood
BP	GO:0000710	meiotic mismatch repair	IEP	Neighborhood
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004551	nucleotide diphosphatase activity	IEP	Neighborhood
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005539	glycosaminoglycan binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
BP	GO:0006261	DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:0006275	regulation of DNA replication	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006301	postreplication repair	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006879	cellular iron ion homeostasis	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0007005	mitochondrion organization	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Neighborhood
MF	GO:0008199	ferric iron binding	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
BP	GO:0008283	cell proliferation	IEP	Neighborhood
MF	GO:0008864	formyltetrahydrofolate deformylase activity	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0009508	plastid chromosome	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Neighborhood
BP	GO:0016444	somatic cell DNA recombination	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0018193	peptidyl-amino acid modification	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019985	translesion synthesis	IEP	Neighborhood
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0032042	mitochondrial DNA metabolic process	IEP	Neighborhood
MF	GO:0032135	DNA insertion or deletion binding	IEP	Neighborhood
MF	GO:0032137	guanine/thymine mispair binding	IEP	Neighborhood
MF	GO:0032138	single base insertion or deletion binding	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
CC	GO:0032300	mismatch repair complex	IEP	Neighborhood
CC	GO:0032301	MutSalpha complex	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
BP	GO:0042276	error-prone translesion synthesis	IEP	Neighborhood
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042780	tRNA 3'-end processing	IEP	Neighborhood
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	Neighborhood
MF	GO:0042834	peptidoglycan binding	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
MF	GO:0043530	adenosine 5'-monophosphoramidase activity	IEP	Neighborhood
BP	GO:0043570	maintenance of DNA repeat elements	IEP	Neighborhood
BP	GO:0043628	ncRNA 3'-end processing	IEP	Neighborhood
BP	GO:0044030	regulation of DNA methylation	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood
BP	GO:0045910	negative regulation of DNA recombination	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Neighborhood
MF	GO:0047627	adenylylsulfatase activity	IEP	Neighborhood
MF	GO:0047710	bis(5'-adenosyl)-triphosphatase activity	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051567	histone H3-K9 methylation	IEP	Neighborhood
BP	GO:0055072	iron ion homeostasis	IEP	Neighborhood
BP	GO:0061647	histone H3-K9 modification	IEP	Neighborhood
MF	GO:0070567	cytidylyltransferase activity	IEP	Neighborhood
BP	GO:0071897	DNA biosynthetic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
CC	GO:1990391	DNA repair complex	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G48460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation