AMTR_s00040p00209530 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.220

Description : RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor

Gene families : OG0000090 (Archaeplastida) Phylogenetic Tree(s): OG0000090_tree ,
OG_05_0000053 (LandPlants) Phylogenetic Tree(s): OG_05_0000053_tree ,
OG_06_0000608 (SeedPlants) Phylogenetic Tree(s): OG_06_0000608_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00209530
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270580	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	Archaeplastida
AMTR_s00069p00068180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
AT3G24520	AT-HSFC1, HSFC1	heat shock transcription factor C1	0.02	Archaeplastida
AT4G36990	HSF4, HSFB1,...	heat shock factor 4	0.03	Archaeplastida
GSVIVT01019829001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
GSVIVT01020781001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
GSVIVT01021269001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
GSVIVT01022134001	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
Gb_00558	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.04	Archaeplastida
Gb_11758	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.02	Archaeplastida
LOC_Os03g53340.2	No alias	transcription factor (HSF)	0.04	Archaeplastida
LOC_Os06g36930.1	No alias	transcription factor (HSF)	0.04	Archaeplastida
LOC_Os09g28354.1	No alias	transcription factor (HSF)	0.02	Archaeplastida
MA_110587g0010	No alias	transcription factor (HSF)	0.02	Archaeplastida
MA_5374g0010	No alias	transcription factor (HSF)	0.04	Archaeplastida
Pp3c1_32480V3.1	No alias	heat shock factor 3	0.02	Archaeplastida
Pp3c7_7720V3.1	No alias	heat shock transcription factor A1E	0.02	Archaeplastida
Smo37324	No alias	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	Archaeplastida
Solyc03g006000.3.1	No alias	transcription factor (HSF)	0.05	Archaeplastida
Solyc03g097120.3.1	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.02	Archaeplastida
Solyc04g078770.4.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc06g053960.3.1	No alias	transcription factor (HSF)	0.04	Archaeplastida
Solyc07g055710.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Solyc08g076590.3.1	No alias	transcription factor (HSF). transcriptional regulator (HsfA1)	0.03	Archaeplastida
Solyc09g059520.3.1	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e005982_P001	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e024268_P001	No alias	transcription factor (HSF)	0.03	Archaeplastida
Zm00001e029052_P001	No alias	transcription factor (HSF)	0.04	Archaeplastida
Zm00001e034336_P001	No alias	transcription factor (HSF)	0.02	Archaeplastida
Zm00001e035680_P002	No alias	transcription factor (HSF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003756	protein disulfide isomerase activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004143	diacylglycerol kinase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004806	triglyceride lipase activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0007205	protein kinase C-activating G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	55	147

External Links

No external refs found!

AMTR_s00040p00209530 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation