AMTR_s00040p00226100 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.267

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0003266 (LandPlants) Phylogenetic Tree(s): OG_05_0003266_tree ,
OG_06_0004582 (SeedPlants) Phylogenetic Tree(s): OG_06_0004582_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00226100
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
AT1G11100 No alias SNF2 domain-containing protein / helicase... 0.02 Archaeplastida
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.05 Archaeplastida
Cpa|evm.model.tig00021014.10 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre01.g046237 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01031410001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Gb_33076 No alias chromatin remodeling factor (Ris1) 0.02 Archaeplastida
LOC_Os02g32570.1 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.04 Archaeplastida
MA_4534g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c21_12900V3.1 No alias SNF2 domain-containing protein / helicase... 0.03 Archaeplastida
Pp3c24_8230V3.1 No alias DNA/RNA helicase protein 0.05 Archaeplastida
Solyc02g050280.4.1 No alias chromatin remodeling factor (Ris1) 0.06 Archaeplastida
Solyc11g066790.2.1 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
Zm00001e021657_P003 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.03 Archaeplastida
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004143 diacylglycerol kinase activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004532 exoribonuclease activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
BP GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 923 1000
IPR014905 HIRAN 136 247
IPR000330 SNF2_N 374 763
No external refs found!