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  5. GSVIVT01031186001

GSVIVT01031186001


Description : RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor


Gene families : OG0000601 (Archaeplastida) Phylogenetic Tree(s): OG0000601_tree ,
OG_05_0000851 (LandPlants) Phylogenetic Tree(s): OG_05_0000851_tree ,
OG_06_0000882 (SeedPlants) Phylogenetic Tree(s): OG_06_0000882_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031186001
Cluster HCCA: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
AT1G15750 TPL, WSIP1 Transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
AT1G80490 TPR1 TOPLESS-related 1 0.04 Archaeplastida
Gb_32130 No alias transcriptional repressor (TPL). transcriptional... 0.04 Archaeplastida
Gb_37153 No alias transcriptional repressor (TPL). transcriptional... 0.04 Archaeplastida
Gb_39002 No alias transcriptional repressor (TPL). transcriptional... 0.02 Archaeplastida
LOC_Os01g15020.1 No alias transcriptional repressor (TPL). transcriptional... 0.04 Archaeplastida
LOC_Os03g14980.1 No alias transcriptional repressor (TPL). transcriptional... 0.03 Archaeplastida
MA_366520g0010 No alias Protein TPR2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Smo163891 No alias RNA biosynthesis.transcriptional repression.TPL/TPR... 0.02 Archaeplastida
Smo88677 No alias RNA biosynthesis.transcriptional repression.TPL/TPR... 0.03 Archaeplastida
Zm00001e001080_P001 No alias transcriptional repressor (TPL). transcriptional... 0.02 Archaeplastida
Zm00001e038558_P003 No alias transcriptional repressor (TPL). transcriptional... 0.03 Archaeplastida
Zm00001e040187_P001 No alias transcriptional repressor (TPL). transcriptional... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004057 arginyltransferase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0016598 protein arginylation IEP Neighborhood
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 449 483
IPR001680 WD40_repeat 913 946
No external refs found!