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  5. GSVIVT01033519001

GSVIVT01033519001


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033519001
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00235390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00142740 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.03 Archaeplastida
AT1G27360 SPL11 squamosa promoter-like 11 0.07 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.03 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Archaeplastida
AT1G76580 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.04 Archaeplastida
AT3G60030 SPL12 squamosa promoter-binding protein-like 12 0.03 Archaeplastida
AT5G50570 SPL13, SPL13A Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
AT5G50670 SPL13, SPL13B Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
Cre10.g433350 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01003836001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01010522001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os01g69830.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os09g32944.1 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_10435426g0010 No alias transcription factor (SBP) 0.02 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.04 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.04 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Solyc01g068100.4.1 No alias Squamosa promoter-binding-like protein 1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc01g090730.3.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc02g077920.4.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.09 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc12g038520.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e009093_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e010443_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e021425_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e021962_P003 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e021967_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 52 125
No external refs found!