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  5. Cre01.g048850

Cre01.g048850


No description available


Gene families : OG0001277 (Archaeplastida) Phylogenetic Tree(s): OG0001277_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g048850
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.01 Archaeplastida
Cpa|evm.model.tig00001215.1 No alias No description available 0.01 Archaeplastida
GSVIVT01007806001 No alias No description available 0.02 Archaeplastida
Gb_05690 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g50840.2 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g50850.2 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_24475g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc06g071350.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e002441_P003 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e037792_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e037793_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
CC GO:0031082 BLOC complex IEP Neighborhood
CC GO:0031083 BLOC-1 complex IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001606 ARID_dom 144 242
IPR000770 SAND_dom 14 83
No external refs found!