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  5. Cre02.g143600

Cre02.g143600


Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component


Gene families : OG0001454 (Archaeplastida) Phylogenetic Tree(s): OG0001454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g143600
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00140350 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
AMTR_s00038p00133080 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 Archaeplastida
GSVIVT01012401001 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 Archaeplastida
LOC_Os07g45160.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.01 Archaeplastida
MA_10433322g0010 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 Archaeplastida
Pp3c3_29590V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Archaeplastida
Solyc12g035670.3.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 514 837
No external refs found!