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  5. Cre03.g194800

Cre03.g194800


Description : RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Clp1 component


Gene families : OG0004454 (Archaeplastida) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre03.g194800
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AT3G04680 CLPS3 CLP-similar protein 3 0.02 Archaeplastida
LOC_Os02g12570.1 No alias component Clp1 of Cleavage Factor II (CF-IIm) complex 0.04 Archaeplastida
MA_136459g0010 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
InterPro domains Description Start Stop
IPR032324 Clp1_N 13 103
IPR010655 Clp1_C 319 426
IPR032319 CLP1_P 125 313
No external refs found!