1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00052p00106580

AMTR_s00052p00106580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00052.33

No description available


Gene families : OG0001607 (Archaeplastida) Phylogenetic Tree(s): OG0001607_tree ,
OG_05_0009412 (LandPlants) Phylogenetic Tree(s): OG_05_0009412_tree ,
OG_06_0008499 (SeedPlants) Phylogenetic Tree(s): OG_06_0008499_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00052p00106580
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
LOC_Os11g39130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Smo84712 No alias No description available 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009235 cobalamin metabolic process IEP Neighborhood
BP GO:0009236 cobalamin biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 51 102
No external refs found!