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  5. Cre16.g687301

Cre16.g687301


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1)


Gene families : OG0003426 (Archaeplastida) Phylogenetic Tree(s): OG0003426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g687301
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT3G54280 BTAF1, RGD3,... DNA binding;ATP binding;nucleic acid... 0.06 Archaeplastida
GSVIVT01019359001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Gb_19667 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.03 Archaeplastida
MA_10431148g0010 No alias TATA-binding protein-associated factor BTAF1... 0.03 Archaeplastida
MA_79681g0010 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.02 Archaeplastida
Pp3c3_11220V3.1 No alias DNA binding;ATP binding;nucleic acid... 0.03 Archaeplastida
Smo186944 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Solyc08g074500.2.1 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.02 Archaeplastida
Solyc08g074510.1.1 No alias TATA-binding protein-associated factor BTAF1... 0.05 Archaeplastida
Solyc08g074520.2.1 No alias TATA-binding protein-associated factor BTAF1... 0.04 Archaeplastida
Zm00001e032564_P001 No alias chromatin remodeling factor (Mot1). TATA box-binding... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 1112 1458
IPR022707 DUF3535 654 906
IPR001650 Helicase_C 1555 1654
IPR000357 HEAT 1032 1059
No external refs found!