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  5. AMTR_s00060p00196600

AMTR_s00060p00196600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00060.141

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component


Gene families : OG0006926 (Archaeplastida) Phylogenetic Tree(s): OG0006926_tree ,
OG_05_0005266 (LandPlants) Phylogenetic Tree(s): OG_05_0005266_tree ,
OG_06_0005449 (SeedPlants) Phylogenetic Tree(s): OG_06_0005449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00196600
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G23230 No alias CONTAINS InterPro DOMAIN/s: Mediator complex subunit... 0.06 Archaeplastida
GSVIVT01011680001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Gb_41520 No alias component MED23 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
LOC_Os02g49992.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.06 Archaeplastida
MA_10281498g0010 No alias component MED23 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
MA_10430175g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp1g05140.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.02 Archaeplastida
Pp3c27_2940V3.1 No alias No annotation 0.04 Archaeplastida
Solyc05g016440.3.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.08 Archaeplastida
Solyc05g016460.2.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.05 Archaeplastida
Zm00001e015737_P001 No alias component MED23 of tail module of MEDIATOR transcription... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021629 Mediator_Med23 455 1159
No external refs found!