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Aliases : evm_27.TU.AmTr_v1.0_scaffold00066.162
Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor
Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00066p00157030 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00010p00230750 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| AMTR_s00010p00236050 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| AMTR_s00010p00255890 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| AMTR_s00038p00175390 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| AMTR_s00066p00157220 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| AT1G21150 | No alias | Mitochondrial transcription termination factor family protein | 0.03 | Archaeplastida | |
| GSVIVT01022213001 | No alias | RNA biosynthesis.organelle... | 0.01 | Archaeplastida | |
| GSVIVT01028382001 | No alias | RNA biosynthesis.organelle... | 0.03 | Archaeplastida | |
| Gb_07257 | No alias | TAC15 cofactor of plastid-encoded RNA polymerase.... | 0.03 | Archaeplastida | |
| Gb_15878 | No alias | transcription factor (mTERF) | 0.05 | Archaeplastida | |
| Gb_26175 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Gb_26176 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Gb_26213 | No alias | transcription factor (mTERF) | 0.04 | Archaeplastida | |
| Gb_31439 | No alias | transcription factor (mTERF) | 0.01 | Archaeplastida | |
| LOC_Os06g12070.1 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| MA_192398g0010 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| MA_415377g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| MA_493420g0010 | No alias | transcription factor (mTERF) | 0.01 | Archaeplastida | |
| MA_7539255g0010 | No alias | no hits & (original description: none) | 0.01 | Archaeplastida | |
| Solyc02g082010.3.1 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida | |
| Solyc04g072500.1.1 | No alias | transcription factor (mTERF) | 0.01 | Archaeplastida | |
| Solyc04g072540.3.1 | No alias | transcription factor (mTERF) | 0.03 | Archaeplastida | |
| Solyc04g072550.3.1 | No alias | transcription factor (mTERF) | 0.05 | Archaeplastida | |
| Zm00001e022322_P001 | No alias | transcription factor (mTERF) | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
| MF | GO:0003917 | DNA topoisomerase type I activity | IEP | Neighborhood |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
| MF | GO:0003964 | RNA-directed DNA polymerase activity | IEP | Neighborhood |
| MF | GO:0004665 | prephenate dehydrogenase (NADP+) activity | IEP | Neighborhood |
| MF | GO:0004835 | tubulin-tyrosine ligase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| MF | GO:0005516 | calmodulin binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| CC | GO:0005856 | cytoskeleton | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
| BP | GO:0006278 | RNA-dependent DNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0006570 | tyrosine metabolic process | IEP | Neighborhood |
| BP | GO:0006571 | tyrosine biosynthetic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| BP | GO:0008219 | cell death | IEP | Neighborhood |
| MF | GO:0008977 | prephenate dehydrogenase (NAD+) activity | IEP | Neighborhood |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0071897 | DNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| No external refs found! |