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  5. AMTR_s00090p00083520

AMTR_s00090p00083520 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00090.29

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0006542 (LandPlants) Phylogenetic Tree(s): OG_05_0006542_tree ,
OG_06_0007653 (SeedPlants) Phylogenetic Tree(s): OG_06_0007653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00090p00083520
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT1G26370 No alias RNA helicase family protein 0.03 Archaeplastida
AT3G62310 No alias RNA helicase family protein 0.02 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cpa|evm.model.tig00020531.53 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 Archaeplastida
Cpa|evm.model.tig00021589.28 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
Cpa|evm.model.tig00022075.25 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Cre07.g329150 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
GSVIVT01010362001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
LOC_Os06g09280.1 No alias RNA helicase (Prp22) 0.02 Archaeplastida
LOC_Os11g20554.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g21130.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Mp4g18940.1 No alias RNA helicase (Prp22) 0.03 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.04 Archaeplastida
Pp3c23_12820V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.04 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
Solyc05g015040.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Solyc09g008120.4.1 No alias RNA helicase (Prp22) 0.03 Archaeplastida
Solyc09g097820.3.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Zm00001e035576_P001 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008026 ATP-dependent helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000149 SNARE binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005785 signal recognition particle receptor complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008158 hedgehog receptor activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019905 syntaxin binding IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011709 DUF1605 641 728
IPR001650 Helicase_C 335 423
IPR011545 DEAD/DEAH_box_helicase_dom 80 251
IPR007502 Helicase-assoc_dom 485 576
No external refs found!