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  5. AMTR_s00090p00148990

AMTR_s00090p00148990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00090.83

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor


Gene families : OG0000082 (Archaeplastida) Phylogenetic Tree(s): OG0000082_tree ,
OG_05_0001935 (LandPlants) Phylogenetic Tree(s): OG_05_0001935_tree ,
OG_06_0002288 (SeedPlants) Phylogenetic Tree(s): OG_06_0002288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00090p00148990
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.12 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.15 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.09 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.19 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.14 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.09 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.19 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.02 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021275.25 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 Archaeplastida
Cpa|evm.model.tig00021623.13 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.16 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.12 Archaeplastida
GSVIVT01017821001 No alias No description available 0.16 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.12 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.12 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Gb_16310 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.07 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.1 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.04 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.07 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
MA_10436824g0010 No alias No annotation 0.15 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.06 Archaeplastida
MA_23378g0020 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.03 Archaeplastida
MA_470488g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.1 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.08 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.09 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.06 Archaeplastida
Mp5g06580.2 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.07 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.08 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.09 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.13 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.12 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.12 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.06 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.11 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.1 Archaeplastida
Smo130534 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.07 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.08 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.07 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.1 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.03 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.11 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 1585 1663
IPR000330 SNF2_N 1233 1524
No external refs found!