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  5. AT1G75200

AT1G75200


Description : flavodoxin family protein / radical SAM domain-containing protein


Gene families : OG0006979 (Archaeplastida) Phylogenetic Tree(s): OG0006979_tree ,
OG_05_0008315 (LandPlants) Phylogenetic Tree(s): OG_05_0008315_tree ,
OG_06_0009564 (SeedPlants) Phylogenetic Tree(s): OG_06_0009564_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G75200
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
Solyc04g080340.3.1 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 Archaeplastida
Zm00001e005848_P001 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
MF GO:0016491 oxidoreductase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004124 cysteine synthase activity IEP Neighborhood
MF GO:0004164 diphthine synthase activity IEP Neighborhood
MF GO:0004407 histone deacetylase activity IEP Neighborhood
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
MF GO:0004844 uracil DNA N-glycosylase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006268 DNA unwinding involved in DNA replication IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006448 regulation of translational elongation IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
CC GO:0008180 COP9 signalosome IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009640 photomorphogenesis IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
CC GO:0009925 basal plasma membrane IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010338 leaf formation IEP Neighborhood
BP GO:0010358 leaf shaping IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016929 SUMO-specific protease activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0017182 peptidyl-diphthamide metabolic process IEP Neighborhood
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP Neighborhood
BP GO:0018202 peptidyl-histidine modification IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
MF GO:0019213 deacetylase activity IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0033558 protein deacetylase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0040020 regulation of meiotic nuclear division IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0045177 apical part of cell IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048826 cotyledon morphogenesis IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051445 regulation of meiotic cell cycle IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
MF GO:0097506 deaminated base DNA N-glycosylase activity IEP Neighborhood
CC GO:0098590 plasma membrane region IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1900247 regulation of cytoplasmic translational elongation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000765 regulation of cytoplasmic translation IEP Neighborhood
InterPro domains Description Start Stop
IPR007197 rSAM 327 507
IPR013917 tRNA_wybutosine-synth 511 572
IPR008254 Flavodoxin/NO_synth 52 193
No external refs found!