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  5. Gb_09266

Gb_09266


Description : Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana (sp|q9lpc4|ppr1_arath : 263.0)


Gene families : OG0003420 (Archaeplastida) Phylogenetic Tree(s): OG0003420_tree ,
OG_05_0002877 (LandPlants) Phylogenetic Tree(s): OG_05_0002877_tree ,
OG_06_0006005 (SeedPlants) Phylogenetic Tree(s): OG_06_0006005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_09266
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AT1G19520 NFD5 pentatricopeptide (PPR) repeat-containing protein 0.08 Archaeplastida
Gb_41087 No alias Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.01 Archaeplastida
LOC_Os02g39820.1 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.08 Archaeplastida
MA_436401g0010 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.05 Archaeplastida
Solyc07g025210.2.1 No alias Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial... 0.03 Archaeplastida
Zm00001e015082_P001 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 383 418
IPR002885 Pentatricopeptide_repeat 422 469
IPR033443 PPR_long 477 608
IPR002885 Pentatricopeptide_repeat 673 697
No external refs found!