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  5. Gb_17424

Gb_17424


Description : monomeric E3 ubiquitin ligase (HECT)


Gene families : OG0001713 (Archaeplastida) Phylogenetic Tree(s): OG0001713_tree ,
OG_05_0001924 (LandPlants) Phylogenetic Tree(s): OG_05_0001924_tree ,
OG_06_0002093 (SeedPlants) Phylogenetic Tree(s): OG_06_0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17424
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.12 Archaeplastida
AMTR_s00061p00204480 No alias Protein degradation.peptide tagging.Ubiquitin... 0.14 Archaeplastida
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.12 Archaeplastida
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.14 Archaeplastida
Cre01.g012450 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
GSVIVT01009206001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.09 Archaeplastida
GSVIVT01009208001 No alias E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01014697001 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01014698001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida
LOC_Os09g07900.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.02 Archaeplastida
LOC_Os12g24080.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.06 Archaeplastida
MA_20049g0010 No alias monomeric E3 ubiquitin ligase (HECT) 0.08 Archaeplastida
MA_20049g0020 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.1 Archaeplastida
MA_7295g0020 No alias E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.09 Archaeplastida
Pp3c11_25020V3.1 No alias ubiquitin-protein ligase 1 0.09 Archaeplastida
Pp3c24_710V3.1 No alias ubiquitin-protein ligase 2 0.02 Archaeplastida
Pp3c7_8070V3.1 No alias ubiquitin-protein ligase 1 0.07 Archaeplastida
Pp3c7_8076V3.1 No alias ubiquitin-protein ligase 1 0.03 Archaeplastida
Smo154179 No alias Protein degradation.peptide tagging.Ubiquitin... 0.12 Archaeplastida
Solyc04g076620.4.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.04 Archaeplastida
Solyc07g065630.4.1 No alias E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Zm00001e009321_P001 No alias monomeric E3 ubiquitin ligase (HECT) 0.06 Archaeplastida
Zm00001e017836_P002 No alias monomeric E3 ubiquitin ligase (HECT) 0.12 Archaeplastida
Zm00001e039654_P001 No alias monomeric E3 ubiquitin ligase (HECT) 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0048365 Rac GTPase binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
InterPro domains Description Start Stop
IPR010309 E3_Ub_ligase_DUF908 220 382
IPR010309 E3_Ub_ligase_DUF908 98 212
IPR010314 E3_Ub_ligase_DUF913 444 765
IPR000569 HECT_dom 3320 3630
IPR015940 UBA 1269 1306
IPR025527 DUF4414 2631 2661
IPR025527 DUF4414 2592 2619
IPR025527 DUF4414 2555 2580
No external refs found!