| CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0000280 | nuclear division | IEP | Neighborhood |
| BP | GO:0000281 | mitotic cytokinesis | IEP | Neighborhood |
| MF | GO:0000287 | magnesium ion binding | IEP | Neighborhood |
| CC | GO:0000785 | chromatin | IEP | Neighborhood |
| CC | GO:0000790 | nuclear chromatin | IEP | Neighborhood |
| BP | GO:0000910 | cytokinesis | IEP | Neighborhood |
| BP | GO:0000911 | cytokinesis by cell plate formation | IEP | Neighborhood |
| BP | GO:0003006 | developmental process involved in reproduction | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003712 | transcription coregulator activity | IEP | Neighborhood |
| MF | GO:0003713 | transcription coactivator activity | IEP | Neighborhood |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
| MF | GO:0003896 | DNA primase activity | IEP | Neighborhood |
| MF | GO:0004170 | dUTP diphosphatase activity | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005640 | nuclear outer membrane | IEP | Neighborhood |
| CC | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | IEP | Neighborhood |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Neighborhood |
| BP | GO:0006268 | DNA unwinding involved in DNA replication | IEP | Neighborhood |
| BP | GO:0006312 | mitotic recombination | IEP | Neighborhood |
| BP | GO:0006333 | chromatin assembly or disassembly | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006342 | chromatin silencing | IEP | Neighborhood |
| BP | GO:0006346 | methylation-dependent chromatin silencing | IEP | Neighborhood |
| BP | GO:0006349 | regulation of gene expression by genetic imprinting | IEP | Neighborhood |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Neighborhood |
| BP | GO:0006379 | mRNA cleavage | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| BP | GO:0006997 | nucleus organization | IEP | Neighborhood |
| BP | GO:0007000 | nucleolus organization | IEP | Neighborhood |
| BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
| BP | GO:0007017 | microtubule-based process | IEP | Neighborhood |
| BP | GO:0007129 | synapsis | IEP | Neighborhood |
| BP | GO:0007131 | reciprocal meiotic recombination | IEP | Neighborhood |
| BP | GO:0007140 | male meiotic nuclear division | IEP | Neighborhood |
| BP | GO:0007267 | cell-cell signaling | IEP | Neighborhood |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Neighborhood |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| BP | GO:0008356 | asymmetric cell division | IEP | Neighborhood |
| BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009292 | genetic transfer | IEP | Neighborhood |
| BP | GO:0009294 | DNA mediated transformation | IEP | Neighborhood |
| BP | GO:0009394 | 2'-deoxyribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009560 | embryo sac egg cell differentiation | IEP | Neighborhood |
| BP | GO:0009615 | response to virus | IEP | Neighborhood |
| BP | GO:0009616 | virus induced gene silencing | IEP | Neighborhood |
| BP | GO:0009640 | photomorphogenesis | IEP | Neighborhood |
| BP | GO:0009756 | carbohydrate mediated signaling | IEP | Neighborhood |
| BP | GO:0009790 | embryo development | IEP | Neighborhood |
| BP | GO:0009791 | post-embryonic development | IEP | Neighborhood |
| BP | GO:0009793 | embryo development ending in seed dormancy | IEP | Neighborhood |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0009909 | regulation of flower development | IEP | Neighborhood |
| BP | GO:0009933 | meristem structural organization | IEP | Neighborhood |
| BP | GO:0009957 | epidermal cell fate specification | IEP | Neighborhood |
| BP | GO:0010026 | trichome differentiation | IEP | Neighborhood |
| BP | GO:0010069 | zygote asymmetric cytokinesis in embryo sac | IEP | Neighborhood |
| BP | GO:0010070 | zygote asymmetric cell division | IEP | Neighborhood |
| BP | GO:0010182 | sugar mediated signaling pathway | IEP | Neighborhood |
| BP | GO:0010212 | response to ionizing radiation | IEP | Neighborhood |
| BP | GO:0010216 | maintenance of DNA methylation | IEP | Neighborhood |
| BP | GO:0010228 | vegetative to reproductive phase transition of meristem | IEP | Neighborhood |
| BP | GO:0010267 | production of ta-siRNAs involved in RNA interference | IEP | Neighborhood |
| BP | GO:0010389 | regulation of G2/M transition of mitotic cell cycle | IEP | Neighborhood |
| BP | GO:0010424 | DNA methylation on cytosine within a CG sequence | IEP | Neighborhood |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Neighborhood |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
| BP | GO:0016441 | posttranscriptional gene silencing | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Neighborhood |
| BP | GO:0019692 | deoxyribose phosphate metabolic process | IEP | Neighborhood |
| BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | Neighborhood |
| BP | GO:0022414 | reproductive process | IEP | Neighborhood |
| BP | GO:0023052 | signaling | IEP | Neighborhood |
| BP | GO:0030154 | cell differentiation | IEP | Neighborhood |
| BP | GO:0030422 | production of siRNA involved in RNA interference | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| BP | GO:0031048 | chromatin silencing by small RNA | IEP | Neighborhood |
| BP | GO:0031050 | dsRNA fragmentation | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Neighborhood |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Neighborhood |
| BP | GO:0031497 | chromatin assembly | IEP | Neighborhood |
| BP | GO:0031507 | heterochromatin assembly | IEP | Neighborhood |
| CC | GO:0031965 | nuclear membrane | IEP | Neighborhood |
| BP | GO:0032392 | DNA geometric change | IEP | Neighborhood |
| BP | GO:0032506 | cytokinetic process | IEP | Neighborhood |
| BP | GO:0032508 | DNA duplex unwinding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0032776 | DNA methylation on cytosine | IEP | Neighborhood |
| CC | GO:0033186 | CAF-1 complex | IEP | Neighborhood |
| MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| BP | GO:0035194 | posttranscriptional gene silencing by RNA | IEP | Neighborhood |
| BP | GO:0035196 | production of miRNAs involved in gene silencing by miRNA | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| BP | GO:0035821 | modification of morphology or physiology of other organism | IEP | Neighborhood |
| BP | GO:0035825 | homologous recombination | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0040029 | regulation of gene expression, epigenetic | IEP | Neighborhood |
| MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
| BP | GO:0044003 | modification by symbiont of host morphology or physiology | IEP | Neighborhood |
| BP | GO:0044419 | interspecies interaction between organisms | IEP | Neighborhood |
| BP | GO:0044764 | multi-organism cellular process | IEP | Neighborhood |
| BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | Neighborhood |
| BP | GO:0045892 | negative regulation of transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Neighborhood |
| BP | GO:0048285 | organelle fission | IEP | Neighborhood |
| BP | GO:0048314 | embryo sac morphogenesis | IEP | Neighborhood |
| BP | GO:0048449 | floral organ formation | IEP | Neighborhood |
| BP | GO:0048451 | petal formation | IEP | Neighborhood |
| BP | GO:0048453 | sepal formation | IEP | Neighborhood |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Neighborhood |
| BP | GO:0048532 | anatomical structure arrangement | IEP | Neighborhood |
| BP | GO:0048580 | regulation of post-embryonic development | IEP | Neighborhood |
| BP | GO:0048598 | embryonic morphogenesis | IEP | Neighborhood |
| BP | GO:0048646 | anatomical structure formation involved in morphogenesis | IEP | Neighborhood |
| BP | GO:0048831 | regulation of shoot system development | IEP | Neighborhood |
| BP | GO:0050793 | regulation of developmental process | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051239 | regulation of multicellular organismal process | IEP | Neighborhood |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Neighborhood |
| BP | GO:0051607 | defense response to virus | IEP | Neighborhood |
| BP | GO:0051701 | interaction with host | IEP | Neighborhood |
| BP | GO:0051817 | modification of morphology or physiology of other organism involved in symbiotic interaction | IEP | Neighborhood |
| BP | GO:0052018 | modulation by symbiont of RNA levels in host | IEP | Neighborhood |
| BP | GO:0052249 | modulation of RNA levels in other organism involved in symbiotic interaction | IEP | Neighborhood |
| BP | GO:0061640 | cytoskeleton-dependent cytokinesis | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| BP | GO:0070192 | chromosome organization involved in meiotic cell cycle | IEP | Neighborhood |
| BP | GO:0070828 | heterochromatin organization | IEP | Neighborhood |
| BP | GO:0070918 | production of small RNA involved in gene silencing by RNA | IEP | Neighborhood |
| BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
| BP | GO:0071514 | genetic imprinting | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| CC | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | IEP | Neighborhood |
| BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Neighborhood |
| BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| BP | GO:0098586 | cellular response to virus | IEP | Neighborhood |
| BP | GO:0140013 | meiotic nuclear division | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Neighborhood |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Neighborhood |
| BP | GO:1902410 | mitotic cytokinetic process | IEP | Neighborhood |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:1902749 | regulation of cell cycle G2/M phase transition | IEP | Neighborhood |
| BP | GO:1903046 | meiotic cell cycle process | IEP | Neighborhood |
| BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Neighborhood |
| BP | GO:1905393 | plant organ formation | IEP | Neighborhood |
| CC | GO:1990234 | transferase complex | IEP | Neighborhood |
| BP | GO:2000026 | regulation of multicellular organismal development | IEP | Neighborhood |
| BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:2000241 | regulation of reproductive process | IEP | Neighborhood |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |