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Gb_35988


Description : component SNL of histone deacetylase machineries


Gene families : OG0000780 (Archaeplastida) Phylogenetic Tree(s): OG0000780_tree ,
OG_05_0001649 (LandPlants) Phylogenetic Tree(s): OG_05_0001649_tree ,
OG_06_0003070 (SeedPlants) Phylogenetic Tree(s): OG_06_0003070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35988
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.03 Archaeplastida
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.1 Archaeplastida
AT1G59890 SNL5 SIN3-like 5 0.03 Archaeplastida
AT3G01320 SNL1 SIN3-like 1 0.06 Archaeplastida
AT5G15020 SNL2 SIN3-like 2 0.11 Archaeplastida
Cpa|evm.model.tig00001155.28 No alias Paired amphipathic helix protein Sin3-like 1... 0.01 Archaeplastida
Cre03.g180800 No alias Paired amphipathic helix protein Sin3-like 4... 0.02 Archaeplastida
GSVIVT01020136001 No alias Chromatin organisation.histone modifications.histone... 0.06 Archaeplastida
GSVIVT01032579001 No alias Chromatin organisation.histone modifications.histone... 0.1 Archaeplastida
LOC_Os05g01020.2 No alias component SNL of histone deacetylase machineries 0.03 Archaeplastida
MA_18241g0010 No alias component SNL of histone deacetylase machineries 0.08 Archaeplastida
Mp3g02880.1 No alias component SNL of histone deacetylase machineries 0.08 Archaeplastida
Mp7g11300.1 No alias Paired amphipathic helix protein Sin3-like 2... 0.04 Archaeplastida
Pp3c24_13770V3.1 No alias SIN3-like 3 0.06 Archaeplastida
Pp3c24_19330V3.1 No alias SIN3-like 4 0.03 Archaeplastida
Pp3c8_14940V3.1 No alias SIN3-like 4 0.04 Archaeplastida
Pp3c8_19010V3.1 No alias SIN3-like 4 0.02 Archaeplastida
Smo440352 No alias Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
Solyc02g067570.3.1 No alias component SNL of histone deacetylase machineries 0.04 Archaeplastida
Solyc02g087360.4.1 No alias component SNL of histone deacetylase machineries 0.05 Archaeplastida
Zm00001e017111_P002 No alias component SNL of histone deacetylase machineries 0.09 Archaeplastida
Zm00001e025644_P001 No alias component SNL of histone deacetylase machineries 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 624 725
IPR003822 PAH 235 279
IPR003822 PAH 459 503
IPR003822 PAH 149 193
IPR031693 Sin3_C 1311 1572
No external refs found!