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  5. Mp1g22180.1

Mp1g22180.1


Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana (sp|o04647|pp399_arath : 530.0)


Gene families : OG0008641 (Archaeplastida) Phylogenetic Tree(s): OG0008641_tree ,
OG_05_0008034 (LandPlants) Phylogenetic Tree(s): OG_05_0008034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g22180.1
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Pp3c17_13520V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Solyc03g097000.3.1 No alias Pentatricopeptide repeat-containing protein At5g27270... 0.03 Archaeplastida
Zm00001e036673_P005 No alias Pentatricopeptide repeat-containing protein At5g27270... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004594 pantothenate kinase activity IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006000 fructose metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006771 riboflavin metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Neighborhood
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009231 riboflavin biosynthetic process IEP Neighborhood
BP GO:0009235 cobalamin metabolic process IEP Neighborhood
BP GO:0009236 cobalamin biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
BP GO:0015937 coenzyme A biosynthetic process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Neighborhood
BP GO:0034227 tRNA thio-modification IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042726 flavin-containing compound metabolic process IEP Neighborhood
BP GO:0042727 flavin-containing compound biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR033443 PPR_long 529 679
IPR002885 Pentatricopeptide_repeat 477 523
IPR002885 Pentatricopeptide_repeat 408 456
IPR002885 Pentatricopeptide_repeat 964 1009
IPR002885 Pentatricopeptide_repeat 858 904
IPR002885 Pentatricopeptide_repeat 787 835
IPR002885 Pentatricopeptide_repeat 267 315
IPR002885 Pentatricopeptide_repeat 759 779
IPR002885 Pentatricopeptide_repeat 1037 1062
IPR002885 Pentatricopeptide_repeat 1107 1135
IPR002885 Pentatricopeptide_repeat 376 400
IPR002885 Pentatricopeptide_repeat 931 960
No external refs found!