AT1G20696 (NFD03, HMGB3, NFD3)

Aliases : NFD03, HMGB3, NFD3

Description : high mobility group B3

Gene families : OG0000591 (Archaeplastida) Phylogenetic Tree(s): OG0000591_tree ,
OG_05_0000611 (LandPlants) Phylogenetic Tree(s): OG_05_0000611_tree ,
OG_06_0002258 (SeedPlants) Phylogenetic Tree(s): OG_06_0002258_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G20696
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000663.58	No alias	No description available	0.01	Archaeplastida
Cre06.g261450	No alias	No description available	0.06	Archaeplastida
GSVIVT01021424001	No alias	High mobility group B protein 14 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01032839001	No alias	No description available	0.04	Archaeplastida
Gb_23297	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os08g01100.1	No alias	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Pp3c17_7580V3.1	No alias	high mobility group B3	0.03	Archaeplastida
Solyc04g008820.3.1	No alias	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e023212_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e034918_P002	No alias	HMG1/2-like protein OS=Ipomoea nil (sp\|p40619\|hmgl_iponi : 112.0)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003682	chromatin binding	TAS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	RCA	Interproscan
BP	GO:0006333	chromatin assembly or disassembly	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
MF	GO:0030527	structural constituent of chromatin	TAS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Neighborhood
BP	GO:0003032	detection of oxygen	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
BP	GO:0005513	detection of calcium ion	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005665	RNA polymerase II, core complex	IEP	Neighborhood
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Neighborhood
BP	GO:0006301	postreplication repair	IEP	Neighborhood
BP	GO:0006366	transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009593	detection of chemical stimulus	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0016032	viral process	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019722	calcium-mediated signaling	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
CC	GO:0030880	RNA polymerase complex	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044403	symbiont process	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood
BP	GO:0046786	viral replication complex formation and maintenance	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0051592	response to calcium ion	IEP	Neighborhood
BP	GO:0051606	detection of stimulus	IEP	Neighborhood
BP	GO:0051645	Golgi localization	IEP	Neighborhood
BP	GO:0051646	mitochondrion localization	IEP	Neighborhood
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Neighborhood
BP	GO:0060151	peroxisome localization	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0070483	detection of hypoxia	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR009071	HMG_box_dom	35	104

External Links

No external refs found!

AT1G20696 (NFD03, HMGB3, NFD3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation