AT5G07120 (SNX2b)

Aliases : SNX2b

Description : sorting nexin 2B

Gene families : OG0002219 (Archaeplastida) Phylogenetic Tree(s): OG0002219_tree ,
OG_05_0002609 (LandPlants) Phylogenetic Tree(s): OG_05_0002609_tree ,
OG_06_0002925 (SeedPlants) Phylogenetic Tree(s): OG_06_0002925_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G07120
Cluster	HCCA: Cluster_265

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005543	phospholipid binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016192	vesicle-mediated transport	IMP	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030904	retromer complex	TAS	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031902	late endosome membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	IGI	Interproscan
CC	GO:0032585	multivesicular body membrane	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0035556	intracellular signal transduction	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044440	endosomal part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045324	late endosome to vacuole transport	IMP	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046982	protein heterodimerization activity	IPI	Interproscan
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051604	protein maturation	IMP	Interproscan
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090351	seedling development	IGI	Interproscan
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098805	whole membrane	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	Neighborhood
CC	GO:0000815	ESCRT III complex	IEP	Neighborhood
MF	GO:0003878	ATP citrate synthase activity	IEP	Neighborhood
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	Neighborhood
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005451	monovalent cation:proton antiporter activity	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
CC	GO:0005774	vacuolar membrane	IEP	Neighborhood
CC	GO:0005783	endoplasmic reticulum	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0005996	monosaccharide metabolic process	IEP	Neighborhood
BP	GO:0006085	acetyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0006333	chromatin assembly or disassembly	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006623	protein targeting to vacuole	IEP	Neighborhood
BP	GO:0006814	sodium ion transport	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0007033	vacuole organization	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009051	pentose-phosphate shunt, oxidative branch	IEP	Neighborhood
CC	GO:0009346	citrate lyase complex	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0009556	microsporogenesis	IEP	Neighborhood
BP	GO:0009660	amyloplast organization	IEP	Neighborhood
BP	GO:0009959	negative gravitropism	IEP	Neighborhood
BP	GO:0010118	stomatal movement	IEP	Neighborhood
BP	GO:0010351	lithium ion transport	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015385	sodium:proton antiporter activity	IEP	Neighborhood
MF	GO:0015491	cation:cation antiporter activity	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Neighborhood
BP	GO:0019321	pentose metabolic process	IEP	Neighborhood
MF	GO:0019829	cation-transporting ATPase activity	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030135	coated vesicle	IEP	Neighborhood
CC	GO:0030136	clathrin-coated vesicle	IEP	Neighborhood
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034293	sexual sporulation	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0035384	thioester biosynthetic process	IEP	Neighborhood
MF	GO:0036442	proton-exporting ATPase activity	IEP	Neighborhood
CC	GO:0036452	ESCRT complex	IEP	Neighborhood
BP	GO:0042732	D-xylose metabolic process	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043934	sporulation	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044437	vacuolar part	IEP	Neighborhood
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Neighborhood
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
BP	GO:0048236	plant-type sporogenesis	IEP	Neighborhood
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051321	meiotic cell cycle	IEP	Neighborhood
MF	GO:0051750	delta3,5-delta2,4-dienoyl-CoA isomerase activity	IEP	Neighborhood
BP	GO:0052386	cell wall thickening	IEP	Neighborhood
BP	GO:0052543	callose deposition in cell wall	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072665	protein localization to vacuole	IEP	Neighborhood
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR015404	Vps5_C	315	562
IPR001683	Phox	142	262

External Links

No external refs found!

AT5G07120 (SNX2b)

Expression Profile

Co-expression Networks

Functional Annotation