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  5. MA_10437219g0010

MA_10437219g0010


Description : component mtRPL4 of large ribosomal subunit proteome


Gene families : OG0004129 (Archaeplastida) Phylogenetic Tree(s): OG0004129_tree ,
OG_05_0006270 (LandPlants) Phylogenetic Tree(s): OG_05_0006270_tree ,
OG_06_0008779 (SeedPlants) Phylogenetic Tree(s): OG_06_0008779_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437219g0010
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00151570 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 Archaeplastida
Cpa|evm.model.tig00001003.35 No alias 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.02 Archaeplastida
Cre12.g520400 No alias No description available 0.03 Archaeplastida
GSVIVT01004810001 No alias Protein biosynthesis.organelle translation... 0.04 Archaeplastida
Gb_04540 No alias component mtRPL4 of large ribosomal subunit proteome 0.04 Archaeplastida
LOC_Os11g37510.1 No alias component mtRPL4 of large ribosomal subunit proteome 0.05 Archaeplastida
Mp4g00020.1 No alias component mtRPL4 of large ribosomal subunit proteome 0.05 Archaeplastida
Pp3c13_15330V3.1 No alias Ribosomal protein L4/L1 family 0.07 Archaeplastida
Solyc12g088730.2.1 No alias component mtRPL4 of large ribosomal subunit proteome 0.04 Archaeplastida
Zm00001e006048_P001 No alias component mtRPL4 of large ribosomal subunit proteome 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 129 315
No external refs found!