AT5G24930 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : CONSTANS-like 4


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0001138 (LandPlants) Phylogenetic Tree(s): OG_05_0001138_tree ,
OG_06_0001151 (SeedPlants) Phylogenetic Tree(s): OG_06_0001151_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G24930
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
Cre12.g534100 No alias No description available 0.03 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
LOC_Os02g08150.1 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
LOC_Os04g42020.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
LOC_Os06g44450.1 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os10g41100.1 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc08g006530.4.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.07 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade RCA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of transcription, DNA-templated RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0006612 protein targeting to membrane RCA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009617 response to bacterium RCA Interproscan
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010310 regulation of hydrogen peroxide metabolic process RCA Interproscan
BP GO:0010363 regulation of plant-type hypersensitive response RCA Interproscan
BP GO:0030003 cellular cation homeostasis RCA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0031348 negative regulation of defense response RCA Interproscan
BP GO:0035304 regulation of protein dephosphorylation RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
BP GO:0070838 divalent metal ion transport RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP Neighborhood
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Neighborhood
MF GO:0005217 intracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005221 intracellular cyclic nucleotide activated cation channel activity IEP Neighborhood
MF GO:0005222 intracellular cAMP-activated cation channel activity IEP Neighborhood
MF GO:0005242 inward rectifier potassium channel activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005249 voltage-gated potassium channel activity IEP Neighborhood
MF GO:0005261 cation channel activity IEP Neighborhood
MF GO:0005262 calcium channel activity IEP Neighborhood
MF GO:0005267 potassium channel activity IEP Neighborhood
MF GO:0005372 water transmembrane transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006546 glycine catabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006775 fat-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006874 cellular calcium ion homeostasis IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007263 nitric oxide mediated signal transduction IEP Neighborhood
BP GO:0007602 phototransduction IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
MF GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009071 serine family amino acid catabolic process IEP Neighborhood
BP GO:0009106 lipoate metabolic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009534 chloroplast thylakoid IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009585 red, far-red light phototransduction IEP Neighborhood
BP GO:0009626 plant-type hypersensitive response IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009642 response to light intensity IEP Neighborhood
BP GO:0009644 response to high light intensity IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009765 photosynthesis, light harvesting IEP Neighborhood
BP GO:0009769 photosynthesis, light harvesting in photosystem II IEP Neighborhood
BP GO:0009785 blue light signaling pathway IEP Neighborhood
MF GO:0009881 photoreceptor activity IEP Neighborhood
MF GO:0009882 blue light photoreceptor activity IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009910 negative regulation of flower development IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010099 regulation of photomorphogenesis IEP Neighborhood
BP GO:0010100 negative regulation of photomorphogenesis IEP Neighborhood
BP GO:0010114 response to red light IEP Neighborhood
BP GO:0010118 stomatal movement IEP Neighborhood
BP GO:0010155 regulation of proton transport IEP Neighborhood
BP GO:0010161 red light signaling pathway IEP Neighborhood
BP GO:0010189 vitamin E biosynthetic process IEP Neighborhood
BP GO:0010218 response to far red light IEP Neighborhood
MF GO:0010276 phytol kinase activity IEP Neighborhood
CC GO:0010287 plastoglobule IEP Neighborhood
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Neighborhood
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
BP GO:0010617 circadian regulation of calcium ion oscillation IEP Neighborhood
BP GO:0010928 regulation of auxin mediated signaling pathway IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015085 calcium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015250 water channel activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022843 voltage-gated cation channel activity IEP Neighborhood
CC GO:0030076 light-harvesting complex IEP Neighborhood
BP GO:0030522 intracellular receptor signaling pathway IEP Neighborhood
MF GO:0030551 cyclic nucleotide binding IEP Neighborhood
CC GO:0031976 plastid thylakoid IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0032879 regulation of localization IEP Neighborhood
BP GO:0032880 regulation of protein localization IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034050 host programmed cell death induced by symbiont IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034762 regulation of transmembrane transport IEP Neighborhood
BP GO:0034765 regulation of ion transmembrane transport IEP Neighborhood
BP GO:0036473 cell death in response to oxidative stress IEP Neighborhood
MF GO:0038023 signaling receptor activity IEP Neighborhood
BP GO:0042135 neurotransmitter catabolic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042360 vitamin E metabolic process IEP Neighborhood
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043269 regulation of ion transport IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0043855 cyclic nucleotide-gated ion channel activity IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP Neighborhood
BP GO:0046283 anthocyanin-containing compound metabolic process IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048581 negative regulation of post-embryonic development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051049 regulation of transport IEP Neighborhood
BP GO:0051093 negative regulation of developmental process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051241 negative regulation of multicellular organismal process IEP Neighborhood
BP GO:0051480 regulation of cytosolic calcium ion concentration IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0055074 calcium ion homeostasis IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0071214 cellular response to abiotic stimulus IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0071489 cellular response to red or far red light IEP Neighborhood
BP GO:0071491 cellular response to red light IEP Neighborhood
BP GO:0072503 cellular divalent inorganic cation homeostasis IEP Neighborhood
BP GO:0072507 divalent inorganic cation homeostasis IEP Neighborhood
MF GO:0080043 quercetin 3-O-glucosyltransferase activity IEP Neighborhood
MF GO:0080044 quercetin 7-O-glucosyltransferase activity IEP Neighborhood
MF GO:0080045 quercetin 3'-O-glucosyltransferase activity IEP Neighborhood
MF GO:0080046 quercetin 4'-O-glucosyltransferase activity IEP Neighborhood
CC GO:0080085 signal recognition particle, chloroplast targeting IEP Neighborhood
BP GO:0090056 regulation of chlorophyll metabolic process IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Neighborhood
MF GO:0099094 ligand-gated cation channel activity IEP Neighborhood
BP GO:0104004 cellular response to environmental stimulus IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP Neighborhood
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1904062 regulation of cation transmembrane transport IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000030 regulation of response to red or far red light IEP Neighborhood
BP GO:2000242 negative regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 339 381
IPR000315 Znf_B-box 48 87
IPR000315 Znf_B-box 90 135
No external refs found!