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  5. AT5G52980

AT5G52980


Description : CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG0005996 (Archaeplastida) Phylogenetic Tree(s): OG0005996_tree ,
OG_05_0006504 (LandPlants) Phylogenetic Tree(s): OG_05_0006504_tree ,
OG_06_0006384 (SeedPlants) Phylogenetic Tree(s): OG_06_0006384_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G52980
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Solyc08g076770.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
BP GO:0000302 response to reactive oxygen species IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005527 macrolide binding IEP Neighborhood
MF GO:0005528 FK506 binding IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006148 inosine catabolic process IEP Neighborhood
BP GO:0006152 purine nucleoside catabolic process IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008477 purine nucleosidase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009164 nucleoside catabolic process IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
BP GO:0010193 response to ozone IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019932 second-messenger-mediated signaling IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Neighborhood
CC GO:0031082 BLOC complex IEP Neighborhood
CC GO:0031083 BLOC-1 complex IEP Neighborhood
CC GO:0031501 mannosyltransferase complex IEP Neighborhood
CC GO:0033185 dolichol-phosphate-mannose synthase complex IEP Neighborhood
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Neighborhood
BP GO:0035966 response to topologically incorrect protein IEP Neighborhood
BP GO:0036503 ERAD pathway IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042454 ribonucleoside catabolic process IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0045324 late endosome to vacuole transport IEP Neighborhood
BP GO:0046102 inosine metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046130 purine ribonucleoside catabolic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
MF GO:0047724 inosine nucleosidase activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051788 response to misfolded protein IEP Neighborhood
BP GO:0072523 purine-containing compound catabolic process IEP Neighborhood
BP GO:0080129 proteasome core complex assembly IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
BP GO:1901658 glycosyl compound catabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!