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  5. LOC_Os03g53140.2

LOC_Os03g53140.2


Description : component Sec23 of Sec23/24 cargo adaptor subcomplex


Gene families : OG0001193 (Archaeplastida) Phylogenetic Tree(s): OG0001193_tree ,
OG_05_0001066 (LandPlants) Phylogenetic Tree(s): OG_05_0001066_tree ,
OG_06_0008561 (SeedPlants) Phylogenetic Tree(s): OG_06_0008561_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53140.2
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001408.15 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Gb_05558 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
MA_10427000g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo107900 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Zm00001e012060_P001 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006900 Sec23/24_helical_dom 515 610
IPR006896 Sec23/24_trunk_dom 132 389
IPR006895 Znf_Sec23_Sec24 55 97
IPR007123 Gelsolin-like_dom 629 715
IPR012990 Sec23_24_beta_S 403 503
No external refs found!