Solyc03g116610.3.1

Description : transcription factor (ERF). SHN-type cutin and suberin biosynthesis transcription factor

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0003909 (SeedPlants) Phylogenetic Tree(s): OG_06_0003909_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g116610.3.1
Cluster	HCCA: Cluster_66

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00238800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AMTR_s00069p00140780	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00089p00102760	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AT1G01250	No alias	Integrase-type DNA-binding superfamily protein	0.08	Archaeplastida
AT1G12890	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT1G15360	WIN1, SHN1	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT1G43160	RAP2.6	related to AP2 6	0.04	Archaeplastida
AT1G64380	No alias	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT1G77200	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT3G57600	No alias	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT4G13620	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT4G28140	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT5G19790	RAP2.11	related to AP2 11	0.03	Archaeplastida
AT5G25390	SHN2	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT5G64750	ABR1	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
GSVIVT01009801001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01015540001	No alias	Cell wall.cutin and suberin.biosynthesis...	0.03	Archaeplastida
GSVIVT01016684001	No alias	Ethylene-responsive transcription factor RAP2-12...	0.04	Archaeplastida
GSVIVT01017315001	No alias	Cell wall.cutin and suberin.biosynthesis...	0.03	Archaeplastida
GSVIVT01017542001	No alias	Ethylene-responsive transcription factor ERF084...	0.03	Archaeplastida
GSVIVT01021060001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
GSVIVT01022277001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01035852001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Gb_01211	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_07992	No alias	Ethylene-responsive transcription factor RAP2-9...	0.03	Archaeplastida
Gb_24328	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_24891	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_26067	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_26855	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_26856	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_26857	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_26858	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_29220	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_29263	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_29359	No alias	transcription factor (ERF). transcription factor (ERN1)	0.03	Archaeplastida
Gb_32532	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_37188	No alias	transcription factor (DREB)	0.03	Archaeplastida
Gb_40290	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_41433	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os01g10370.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os02g10760.1	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.02	Archaeplastida
LOC_Os02g13710.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os02g35240.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os02g42585.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os02g43820.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
LOC_Os02g52670.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os02g54160.2	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os03g08460.1	No alias	Ethylene-responsive transcription factor ERF073...	0.03	Archaeplastida
LOC_Os03g08470.1	No alias	Ethylene-responsive transcription factor 1 OS=Oryza...	0.03	Archaeplastida
LOC_Os03g64260.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os04g46220.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os04g46250.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os04g52090.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os05g41780.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os06g08340.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os06g40150.1	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.06	Archaeplastida
LOC_Os08g31580.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os08g36920.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os08g41030.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10020434g0010	No alias	Ethylene-responsive transcription factor ERF013...	0.03	Archaeplastida
MA_10031781g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_10432800g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_10433310g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_108992g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_15251g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_168025g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_19532g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_214063g0010	No alias	transcription factor (DREB)	0.07	Archaeplastida
MA_40048g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_411387g0010	No alias	transcription factor (ERF)	0.05	Archaeplastida
MA_428433g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_500288g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_54341g0010	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.06	Archaeplastida
MA_6677438g0010	No alias	transcription factor (ERF)	0.05	Archaeplastida
MA_7850076g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_7960347g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_8384767g0010	No alias	transcription factor (DREB)	0.03	Archaeplastida
MA_94228g0010	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.02	Archaeplastida
Mp7g00860.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
Mp7g09350.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Pp3c10_17870V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.07	Archaeplastida
Pp3c16_13260V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c16_13280V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c21_13130V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
Pp3c25_1760V3.1	No alias	related to AP2 11	0.04	Archaeplastida
Pp3c26_14710V3.1	No alias	ethylene responsive element binding factor 1	0.03	Archaeplastida
Pp3c27_6030V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c4_2530V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c4_2660V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c4_27870V3.1	No alias	ethylene responsive element binding factor 1	0.03	Archaeplastida
Pp3c5_880V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c6_20480V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Solyc01g090560.4.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
Solyc04g051360.3.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc05g052040.1.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc05g052050.1.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
Solyc06g066540.1.1	No alias	transcription factor (DREB)	0.05	Archaeplastida
Zm00001e003579_P001	No alias	Ethylene-responsive transcription factor ERF015...	0.02	Archaeplastida
Zm00001e007350_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e013685_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e014008_P002	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.08	Archaeplastida
Zm00001e015314_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e019837_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e022016_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e023157_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e023686_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e023759_P001	No alias	Ethylene-responsive transcription factor ERF017...	0.02	Archaeplastida
Zm00001e023816_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e025999_P001	No alias	transcription factor (DREB)	0.04	Archaeplastida
Zm00001e026573_P001	No alias	transcription factor (DREB)	0.07	Archaeplastida
Zm00001e029041_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e030585_P001	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.05	Archaeplastida
Zm00001e036130_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e037404_P001	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.05	Archaeplastida
Zm00001e037869_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e038525_P001	No alias	Ethylene-responsive transcription factor ERF013...	0.03	Archaeplastida
Zm00001e041288_P001	No alias	transcription factor (DREB)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004334	fumarylacetoacetase activity	IEP	Neighborhood
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0004470	malic enzyme activity	IEP	Neighborhood
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Neighborhood
MF	GO:0004568	chitinase activity	IEP	Neighborhood
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Neighborhood
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	Neighborhood
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006022	aminoglycan metabolic process	IEP	Neighborhood
BP	GO:0006026	aminoglycan catabolic process	IEP	Neighborhood
BP	GO:0006030	chitin metabolic process	IEP	Neighborhood
BP	GO:0006032	chitin catabolic process	IEP	Neighborhood
BP	GO:0006040	amino sugar metabolic process	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0006875	cellular metal ion homeostasis	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
MF	GO:0016615	malate dehydrogenase activity	IEP	Neighborhood
MF	GO:0016822	hydrolase activity, acting on acid carbon-carbon bonds	IEP	Neighborhood
MF	GO:0016823	hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	IEP	Neighborhood
MF	GO:0016872	intramolecular lyase activity	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
BP	GO:0030026	cellular manganese ion homeostasis	IEP	Neighborhood
MF	GO:0030695	GTPase regulator activity	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046348	amino sugar catabolic process	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
BP	GO:0055065	metal ion homeostasis	IEP	Neighborhood
BP	GO:0055071	manganese ion homeostasis	IEP	Neighborhood
BP	GO:0055076	transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Neighborhood
BP	GO:0098771	inorganic ion homeostasis	IEP	Neighborhood
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Neighborhood
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	6	50

External Links

No external refs found!

Solyc03g116610.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation