1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01023839001

GSVIVT01023839001


Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase


Gene families : OG0000845 (Archaeplastida) Phylogenetic Tree(s): OG0000845_tree ,
OG_05_0013741 (LandPlants) Phylogenetic Tree(s): OG_05_0013741_tree ,
OG_06_0013584 (SeedPlants) Phylogenetic Tree(s): OG_06_0013584_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023839001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.44 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Cpa|evm.model.tig00000215.121 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Cpa|evm.model.tig00001307.14 No alias Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase... 0.02 Archaeplastida
Cre09.g387393 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
LOC_Os04g33480.1 No alias class-I histone deacetylase 0.02 Archaeplastida
Zm00001e008229_P001 No alias class-I histone deacetylase. component HDA9 of HDA9-PWR... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 46 216
No external refs found!