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  5. Cre12.g493550

Cre12.g493550


No description available


Gene families : OG0004584 (Archaeplastida) Phylogenetic Tree(s): OG0004584_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g493550
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00059860 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
AT1G76630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
GSVIVT01013460001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Gb_35868 No alias component SKI3 of SUPERKILLER (SKI) regulation complex 0.02 Archaeplastida
Mp1g26080.1 No alias component SKI3 of SUPERKILLER (SKI) regulation complex 0.03 Archaeplastida
Smo115934 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Smo431495 No alias RNA processing.RNA decay.exosome complex.associated... 0.01 Archaeplastida
Smo50390 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Zm00001e002277_P001 No alias component SKI3 of SUPERKILLER (SKI) regulation complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003989 acetyl-CoA carboxylase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016421 CoA carboxylase activity IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019734 TPR_repeat 38 71
IPR019734 TPR_repeat 951 982
No external refs found!