AMTR_s00056p00132920 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.104

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000720 (LandPlants) Phylogenetic Tree(s): OG_05_0000720_tree ,
OG_06_0000544 (SeedPlants) Phylogenetic Tree(s): OG_06_0000544_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00056p00132920
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00164980	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AMTR_s00018p00193700	evm_27.TU.AmTr_v1...	ABC transporter B family member 14 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00018p00193820	evm_27.TU.AmTr_v1...	ABC transporter B family member 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00048p00046670	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
AT1G02530	PGP12	P-glycoprotein 12	0.03	Archaeplastida
AT1G27940	PGP13	P-glycoprotein 13	0.04	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	Archaeplastida
AT4G01830	PGP5	P-glycoprotein 5	0.03	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.03	Archaeplastida
Cre17.g725150	No alias	ABC transporter B family member 7 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01015306001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
GSVIVT01021365001	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
Gb_07563	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_13906	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_32125	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Gb_33057	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Gb_33058	No alias	subfamily ABCB transporter	0.02	Archaeplastida
LOC_Os01g18670.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os02g46680.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os05g47500.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_18863g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Pp3c1_31680V3.1	No alias	ABC transporter family protein	0.01	Archaeplastida
Pp3c1_7215V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Pp3c21_18190V3.1	No alias	ATP binding cassette subfamily B19	0.02	Archaeplastida
Smo230688	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Solyc03g005860.4.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc03g093650.3.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc06g009280.1.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc08g076720.4.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Solyc11g067300.2.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e014797_P002	No alias	subfamily ABCB transporter	0.03	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Zm00001e041087_P002	No alias	subfamily ABCB transporter	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0003872	6-phosphofructokinase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Neighborhood
CC	GO:0005945	6-phosphofructokinase complex	IEP	Neighborhood
BP	GO:0006308	DNA catabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
MF	GO:0019200	carbohydrate kinase activity	IEP	Neighborhood
BP	GO:0019439	aromatic compound catabolic process	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Neighborhood
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044445	cytosolic part	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046700	heterocycle catabolic process	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	1058	1191
IPR003439	ABC_transporter-like	427	552

External Links

No external refs found!

AMTR_s00056p00132920 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation