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  5. Cre17.g745547

Cre17.g745547


No description available


Gene families : OG0002503 (Archaeplastida) Phylogenetic Tree(s): OG0002503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g745547
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00171490 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 Archaeplastida
AT5G58040 FIP1[V],... homolog of yeast FIP1 [V] 0.07 Archaeplastida
Cpa|evm.model.tig00021312.38 No alias No description available 0.02 Archaeplastida
GSVIVT01023597001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
GSVIVT01034996001 No alias FIP1[V]-like protein OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_32960 No alias component Fip1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
LOC_Os03g19570.1 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os03g51520.1 No alias component Fip1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Mp5g14310.1 No alias component Fip1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Pp3c11_22610V3.1 No alias homolog of yeast FIP1 [V] 0.03 Archaeplastida
Smo441074 No alias FIP1[V]-like protein OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc07g005320.3.1 No alias component Fip1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
Zm00001e001458_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e005530_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e012129_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003714 transcription corepressor activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007854 Fip1 337 380
No external refs found!