1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_01502

Gb_01502


Description : alpha-class expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0000041 (SeedPlants) Phylogenetic Tree(s): OG_06_0000041_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01502
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00115760 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
AMTR_s00022p00153780 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00077p00060330 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.04 Archaeplastida
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.04 Archaeplastida
AT1G26770 ATEXPA10,... expansin A10 0.02 Archaeplastida
AT1G62980 EXPA18, EXP18,... expansin A18 0.04 Archaeplastida
AT2G40610 EXPA8, ATHEXP... expansin A8 0.03 Archaeplastida
AT3G15370 ATHEXP ALPHA... expansin 12 0.03 Archaeplastida
AT3G55500 EXPA16, ATHEXP... expansin A16 0.02 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.06 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.05 Archaeplastida
GSVIVT01000214001 No alias Phytohormones.signalling peptides.NCRP... 0.03 Archaeplastida
GSVIVT01007987001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01019965001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
GSVIVT01025509001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
GSVIVT01028215001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01030192001 No alias Expansin-A2 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Gb_01504 No alias alpha-class expansin 0.05 Archaeplastida
Gb_04404 No alias alpha-class expansin 0.03 Archaeplastida
Gb_07424 No alias alpha-class expansin 0.04 Archaeplastida
Gb_07436 No alias Expansin-A4 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os01g14650.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os01g14660.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os01g16770.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os02g16730.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g06000.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g06010.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g06050.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os03g31480.1 No alias alpha-class expansin 0.06 Archaeplastida
LOC_Os04g15840.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os05g19570.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os05g19600.1BP No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os06g01920.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os10g30330.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os10g30340.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os10g39110.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os12g36040.1 No alias alpha-class expansin 0.04 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_10299189g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_103404g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_104065g0020 No alias alpha-class expansin 0.03 Archaeplastida
MA_10425823g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_10429288g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_114349g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_275115g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_30127g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_36587g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_37884g0010 No alias alpha-class expansin 0.06 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.03 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.06 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_6644365g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_70880g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_86877g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_8784268g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_91602g0010 No alias Expansin-A2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Mp1g22730.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp2g18610.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g06900.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g09650.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09760.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09770.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g10160.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g01930.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp5g20430.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp8g18860.1 No alias alpha-class expansin 0.02 Archaeplastida
Pp3c11_12000V3.1 No alias expansin A14 0.04 Archaeplastida
Pp3c12_4560V3.1 No alias expansin A9 0.04 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c14_18030V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.03 Archaeplastida
Pp3c24_15400V3.1 No alias expansin A15 0.02 Archaeplastida
Pp3c3_16280V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c7_12870V3.1 No alias expansin A14 0.05 Archaeplastida
Pp3c8_14900V3.1 No alias expansin A14 0.06 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.02 Archaeplastida
Smo236978 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo75237 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo90935 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Solyc01g010890.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc02g088100.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc03g115890.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc04g081870.4.1 No alias alpha-class expansin 0.04 Archaeplastida
Solyc05g052250.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc06g051800.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc07g063210.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.07 Archaeplastida
Solyc09g010860.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e003887_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e003888_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e003889_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e004719_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e004721_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e014220_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e014247_P001 No alias Expansin-A23 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e017334_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e019433_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e029218_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e036693_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006576 cellular biogenic amine metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009309 amine biosynthetic process IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030410 nicotianamine synthase activity IEP Neighborhood
BP GO:0030417 nicotianamine metabolic process IEP Neighborhood
BP GO:0030418 nicotianamine biosynthetic process IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044106 cellular amine metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 162 239
IPR009009 RlpA-like_DPBB 66 150
No external refs found!