Coexpression cluster: Cluster_3 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 12.95% (18/139) 4.5 0.0 0.0
GO:0044427 chromosomal part 9.35% (13/139) 5.18 0.0 0.0
GO:0006270 DNA replication initiation 5.76% (8/139) 6.96 0.0 0.0
GO:0008017 microtubule binding 7.91% (11/139) 5.5 0.0 0.0
GO:0003777 microtubule motor activity 7.91% (11/139) 5.3 0.0 0.0
GO:0007018 microtubule-based movement 7.91% (11/139) 5.23 0.0 0.0
GO:0015631 tubulin binding 7.91% (11/139) 5.23 0.0 0.0
GO:0006928 movement of cell or subcellular component 7.91% (11/139) 5.19 0.0 0.0
GO:0003774 motor activity 7.91% (11/139) 5.16 0.0 0.0
GO:0008092 cytoskeletal protein binding 7.91% (11/139) 5.0 0.0 0.0
GO:0007017 microtubule-based process 7.91% (11/139) 4.97 0.0 0.0
GO:0003677 DNA binding 13.67% (19/139) 3.29 0.0 0.0
GO:0005524 ATP binding 18.71% (26/139) 2.29 0.0 0.0
GO:0090304 nucleic acid metabolic process 13.67% (19/139) 2.8 0.0 0.0
GO:0030554 adenyl nucleotide binding 18.71% (26/139) 2.21 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 18.71% (26/139) 2.22 0.0 0.0
GO:0008144 drug binding 18.71% (26/139) 2.19 0.0 0.0
GO:0009987 cellular process 28.78% (40/139) 1.58 0.0 0.0
GO:0006260 DNA replication 5.04% (7/139) 5.41 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 18.71% (26/139) 2.07 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 13.67% (19/139) 2.49 0.0 0.0
GO:0032553 ribonucleotide binding 18.71% (26/139) 1.99 0.0 0.0
GO:0017076 purine nucleotide binding 18.71% (26/139) 2.0 0.0 0.0
GO:0044815 DNA packaging complex 5.04% (7/139) 5.08 0.0 0.0
GO:0044422 organelle part 10.07% (14/139) 3.07 0.0 0.0
GO:0044446 intracellular organelle part 10.07% (14/139) 3.07 0.0 0.0
GO:0032555 purine ribonucleotide binding 18.71% (26/139) 2.01 0.0 0.0
GO:0097367 carbohydrate derivative binding 18.71% (26/139) 1.97 0.0 0.0
GO:0000808 origin recognition complex 2.88% (4/139) 7.13 0.0 0.0
GO:0046483 heterocycle metabolic process 13.67% (19/139) 2.34 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 13.67% (19/139) 2.34 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 13.67% (19/139) 2.29 0.0 0.0
GO:0000166 nucleotide binding 18.71% (26/139) 1.85 0.0 0.0
GO:1901265 nucleoside phosphate binding 18.71% (26/139) 1.85 0.0 0.0
GO:0017111 nucleoside-triphosphatase activity 10.07% (14/139) 2.82 0.0 0.0
GO:0043168 anion binding 18.71% (26/139) 1.83 0.0 0.0
GO:0016462 pyrophosphatase activity 10.07% (14/139) 2.76 0.0 0.0
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 10.07% (14/139) 2.75 0.0 0.0
GO:0016817 hydrolase activity, acting on acid anhydrides 10.07% (14/139) 2.75 0.0 0.0
GO:0036094 small molecule binding 18.71% (26/139) 1.78 0.0 0.0
GO:1901363 heterocyclic compound binding 26.62% (37/139) 1.37 0.0 0.0
GO:0097159 organic cyclic compound binding 26.62% (37/139) 1.37 0.0 0.0
GO:0000786 nucleosome 4.32% (6/139) 4.9 0.0 0.0
GO:0032993 protein-DNA complex 4.32% (6/139) 4.85 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 17.27% (24/139) 1.79 0.0 1e-06
GO:0034641 cellular nitrogen compound metabolic process 13.67% (19/139) 1.94 1e-06 3e-06
GO:0003676 nucleic acid binding 13.67% (19/139) 1.86 1e-06 6e-06
GO:0044424 intracellular part 12.95% (18/139) 1.88 2e-06 9e-06
GO:0005488 binding 34.53% (48/139) 0.91 4e-06 2e-05
GO:0005634 nucleus 5.04% (7/139) 3.38 5e-06 2.3e-05
GO:0043170 macromolecule metabolic process 17.99% (25/139) 1.42 6e-06 2.4e-05
GO:0044464 cell part 12.95% (18/139) 1.75 7e-06 2.9e-05
GO:0043167 ion binding 20.14% (28/139) 1.27 1e-05 4.1e-05
GO:0043231 intracellular membrane-bounded organelle 5.04% (7/139) 3.01 2.6e-05 0.000108
GO:0043227 membrane-bounded organelle 5.04% (7/139) 3.01 2.6e-05 0.000108
GO:0006807 nitrogen compound metabolic process 17.99% (25/139) 1.26 3.7e-05 0.000148
GO:0005664 nuclear origin of replication recognition complex 1.44% (2/139) 7.13 5.1e-05 0.0002
GO:0032991 protein-containing complex 9.35% (13/139) 1.86 6.6e-05 0.000256
GO:0044237 cellular metabolic process 17.99% (25/139) 1.14 0.000141 0.000536
GO:0000775 chromosome, centromeric region 1.44% (2/139) 6.54 0.000152 0.000567
GO:0005515 protein binding 15.11% (21/139) 1.23 0.00022 0.000809
GO:0098687 chromosomal region 1.44% (2/139) 6.13 0.000302 0.001092
GO:0051276 chromosome organization 2.16% (3/139) 4.25 0.0005 0.001778
GO:0009059 macromolecule biosynthetic process 5.76% (8/139) 1.99 0.000956 0.003293
GO:0044238 primary metabolic process 17.99% (25/139) 0.96 0.00095 0.003324
GO:0005575 cellular_component 15.83% (22/139) 1.01 0.00127 0.00431
GO:0043229 intracellular organelle 5.76% (8/139) 1.88 0.001544 0.005162
GO:0043226 organelle 5.76% (8/139) 1.88 0.001576 0.005192
GO:0044454 nuclear chromosome part 1.44% (2/139) 4.96 0.001772 0.005669
GO:0071103 DNA conformation change 1.44% (2/139) 4.96 0.001772 0.005669
GO:0071704 organic substance metabolic process 17.99% (25/139) 0.88 0.00192 0.006058
GO:0034645 cellular macromolecule biosynthetic process 5.04% (7/139) 1.94 0.002434 0.007573
GO:0022402 cell cycle process 1.44% (2/139) 4.67 0.002681 0.008228
GO:0006996 organelle organization 2.16% (3/139) 3.25 0.003834 0.011607
GO:0016787 hydrolase activity 10.79% (15/139) 1.08 0.004846 0.014472
GO:1905463 negative regulation of DNA duplex unwinding 0.72% (1/139) 7.13 0.007157 0.016876
GO:1905462 regulation of DNA duplex unwinding 0.72% (1/139) 7.13 0.007157 0.016876
GO:0003896 DNA primase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:0061731 ribonucleoside-diphosphate reductase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor 0.72% (1/139) 7.13 0.007157 0.016876
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor 0.72% (1/139) 7.13 0.007157 0.016876
GO:0051095 regulation of helicase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:0030261 chromosome condensation 0.72% (1/139) 7.13 0.007157 0.016876
GO:0051097 negative regulation of helicase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:0071821 FANCM-MHF complex 0.72% (1/139) 7.13 0.007157 0.016876
GO:0042555 MCM complex 0.72% (1/139) 7.13 0.007157 0.016876
GO:0006323 DNA packaging 0.72% (1/139) 7.13 0.007157 0.016876
GO:0000796 condensin complex 0.72% (1/139) 7.13 0.007157 0.016876
GO:1905774 regulation of DNA helicase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:1905775 negative regulation of DNA helicase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:0003964 RNA-directed DNA polymerase activity 0.72% (1/139) 7.13 0.007157 0.016876
GO:1903046 meiotic cell cycle process 0.72% (1/139) 7.13 0.007157 0.016876
GO:0045132 meiotic chromosome segregation 0.72% (1/139) 7.13 0.007157 0.016876
GO:0098813 nuclear chromosome segregation 0.72% (1/139) 7.13 0.007157 0.016876
GO:0007076 mitotic chromosome condensation 0.72% (1/139) 7.13 0.007157 0.016876
GO:0008150 biological_process 29.5% (41/139) 0.53 0.007291 0.017012
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity 0.72% (1/139) 6.13 0.014264 0.031324
GO:0000725 recombinational repair 0.72% (1/139) 6.13 0.014264 0.031324
GO:0000278 mitotic cell cycle 0.72% (1/139) 6.13 0.014264 0.031324
GO:0007059 chromosome segregation 0.72% (1/139) 6.13 0.014264 0.031324
GO:0006269 DNA replication, synthesis of RNA primer 0.72% (1/139) 6.13 0.014264 0.031324
GO:2001251 negative regulation of chromosome organization 0.72% (1/139) 6.13 0.014264 0.031324
GO:0044428 nuclear part 2.16% (3/139) 2.5 0.016071 0.03495
GO:0007049 cell cycle 0.72% (1/139) 5.54 0.021319 0.044631
GO:0016725 oxidoreductase activity, acting on CH or CH2 groups 0.72% (1/139) 5.54 0.021319 0.044631
GO:0019887 protein kinase regulator activity 0.72% (1/139) 5.54 0.021319 0.044631
GO:0019207 kinase regulator activity 0.72% (1/139) 5.54 0.021319 0.044631
GO:0033643 host cell part 1.44% (2/139) 3.08 0.023231 0.045647
GO:0033646 host intracellular part 1.44% (2/139) 3.08 0.023231 0.045647
GO:0033647 host intracellular organelle 1.44% (2/139) 3.08 0.023231 0.045647
GO:0044217 other organism part 1.44% (2/139) 3.08 0.023231 0.045647
GO:0042025 host cell nucleus 1.44% (2/139) 3.08 0.023231 0.045647
GO:0033648 host intracellular membrane-bounded organelle 1.44% (2/139) 3.08 0.023231 0.045647
GO:0044249 cellular biosynthetic process 5.76% (8/139) 1.21 0.023038 0.047783
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_31 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_49 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_55 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_57 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_58 0.074 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_110 0.18 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_172 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_268 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_40 0.047 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_44 0.082 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_60 0.143 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_116 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_158 0.088 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_181 0.042 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_24 0.081 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_46 0.062 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_114 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_22 0.199 Archaeplastida Compare
Gingko biloba HCCA Cluster_49 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_54 0.05 Archaeplastida Compare
Gingko biloba HCCA Cluster_184 0.029 Archaeplastida Compare
Gingko biloba HCCA Cluster_188 0.136 Archaeplastida Compare
Gingko biloba HCCA Cluster_264 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_295 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_1 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_29 0.052 Archaeplastida Compare
Zea mays HCCA Cluster_115 0.174 Archaeplastida Compare
Zea mays HCCA Cluster_175 0.11 Archaeplastida Compare
Zea mays HCCA Cluster_277 0.075 Archaeplastida Compare
Zea mays HCCA Cluster_344 0.057 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_3 0.033 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_6 0.092 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.058 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_154 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_182 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_184 0.101 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_218 0.039 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_252 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_29 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_76 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_92 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_169 0.072 Archaeplastida Compare
Picea abies HCCA Cluster_182 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_194 0.158 Archaeplastida Compare
Picea abies HCCA Cluster_202 0.062 Archaeplastida Compare
Picea abies HCCA Cluster_262 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_296 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_335 0.071 Archaeplastida Compare
Picea abies HCCA Cluster_376 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_379 0.077 Archaeplastida Compare
Picea abies HCCA Cluster_385 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_401 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_423 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_474 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_87 0.161 Archaeplastida Compare
Oryza sativa HCCA Cluster_92 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_173 0.108 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_257 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_310 0.036 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_7 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_29 0.061 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_31 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_51 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_76 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_88 0.047 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_90 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_113 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_130 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.029 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_178 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_192 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_204 0.042 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_2 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_22 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_35 0.079 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_38 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_77 0.11 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_120 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_139 0.08 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_262 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_281 0.073 Archaeplastida Compare
Vitis vinifera HCCA Cluster_26 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_53 0.231 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_132 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_186 0.065 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_3 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_10 0.039 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_40 0.027 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_63 0.097 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_110 0.068 Archaeplastida Compare
Sequences (139) (download table)

InterPro Domains

GO Terms

Family Terms