Coexpression cluster: Cluster_155 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901360 organic cyclic compound metabolic process 11.67% (7/60) 2.53 0.000208 0.008011
GO:0034641 cellular nitrogen compound metabolic process 13.33% (8/60) 2.3 0.000203 0.009383
GO:0006643 membrane lipid metabolic process 3.33% (2/60) 6.21 0.000335 0.01105
GO:0090304 nucleic acid metabolic process 10.0% (6/60) 2.84 0.000192 0.011115
GO:0006725 cellular aromatic compound metabolic process 11.67% (7/60) 2.56 0.000183 0.014073
GO:0006396 RNA processing 5.0% (3/60) 3.76 0.001454 0.017678
GO:0034472 snRNA 3'-end processing 1.67% (1/60) 9.46 0.001422 0.018251
GO:0016073 snRNA metabolic process 1.67% (1/60) 9.46 0.001422 0.018251
GO:0016180 snRNA processing 1.67% (1/60) 9.46 0.001422 0.018251
GO:0030677 ribonuclease P complex 1.67% (1/60) 9.46 0.001422 0.018251
GO:0034477 U6 snRNA 3'-end processing 1.67% (1/60) 9.46 0.001422 0.018251
GO:0043628 ncRNA 3'-end processing 1.67% (1/60) 9.46 0.001422 0.018251
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 1.67% (1/60) 9.46 0.001422 0.018251
GO:0046483 heterocycle metabolic process 11.67% (7/60) 2.57 0.00017 0.019615
GO:0033554 cellular response to stress 5.0% (3/60) 3.98 0.000939 0.019723
GO:0051716 cellular response to stimulus 5.0% (3/60) 3.98 0.000939 0.019723
GO:0006974 cellular response to DNA damage stimulus 5.0% (3/60) 3.98 0.000939 0.019723
GO:0006139 nucleobase-containing compound metabolic process 10.0% (6/60) 2.48 0.000719 0.020768
GO:0003684 damaged DNA binding 3.33% (2/60) 7.0 0.000108 0.025062
GO:0030896 checkpoint clamp complex 1.67% (1/60) 8.46 0.002842 0.025253
GO:0030014 CCR4-NOT complex 1.67% (1/60) 8.46 0.002842 0.025253
GO:0006665 sphingolipid metabolic process 1.67% (1/60) 8.46 0.002842 0.025253
GO:0006672 ceramide metabolic process 1.67% (1/60) 8.46 0.002842 0.025253
GO:1905348 endonuclease complex 1.67% (1/60) 8.46 0.002842 0.025253
GO:1902555 endoribonuclease complex 1.67% (1/60) 8.46 0.002842 0.025253
GO:0016070 RNA metabolic process 6.67% (4/60) 2.87 0.002226 0.025708
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 3.33% (2/60) 4.6 0.003124 0.025769
GO:0016859 cis-trans isomerase activity 3.33% (2/60) 4.6 0.003124 0.025769
GO:0009987 cellular process 21.67% (13/60) 1.16 0.004335 0.031296
GO:0034470 ncRNA processing 3.33% (2/60) 4.33 0.004514 0.031596
GO:0031570 DNA integrity checkpoint 1.67% (1/60) 7.87 0.004261 0.031748
GO:0000077 DNA damage checkpoint 1.67% (1/60) 7.87 0.004261 0.031748
GO:0051499 D-aminoacyl-tRNA deacylase activity 1.67% (1/60) 7.87 0.004261 0.031748
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 1.67% (1/60) 7.46 0.005677 0.035441
GO:0000075 cell cycle checkpoint 1.67% (1/60) 7.46 0.005677 0.035441
GO:0010498 proteasomal protein catabolic process 1.67% (1/60) 7.46 0.005677 0.035441
GO:0017150 tRNA dihydrouridine synthase activity 1.67% (1/60) 7.46 0.005677 0.035441
GO:0006807 nitrogen compound metabolic process 20.0% (12/60) 1.16 0.006175 0.037535
GO:0030163 protein catabolic process 1.67% (1/60) 6.87 0.008503 0.042701
GO:0031123 RNA 3'-end processing 1.67% (1/60) 6.87 0.008503 0.042701
GO:0000105 histidine biosynthetic process 1.67% (1/60) 6.87 0.008503 0.042701
GO:0002161 aminoacyl-tRNA editing activity 1.67% (1/60) 6.87 0.008503 0.042701
GO:0006547 histidine metabolic process 1.67% (1/60) 6.87 0.008503 0.042701
GO:0052803 imidazole-containing compound metabolic process 1.67% (1/60) 6.87 0.008503 0.042701
GO:0140098 catalytic activity, acting on RNA 5.0% (3/60) 2.9 0.00771 0.044523
GO:0140101 catalytic activity, acting on a tRNA 3.33% (2/60) 3.93 0.007669 0.045423
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_22 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_176 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_259 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_262 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_65 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_144 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_210 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_229 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_234 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_15 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_248 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_1 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_186 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_322 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_340 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_77 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_87 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_135 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_156 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_222 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_250 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_339 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_376 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_459 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_469 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_473 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_517 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_159 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_180 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_233 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_114 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_223 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.034 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_50 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_155 0.027 Archaeplastida Compare
Sequences (60) (download table)

InterPro Domains

GO Terms

Family Terms