Coexpression cluster: Cluster_197 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0034641 cellular nitrogen compound metabolic process 20.69% (12/58) 2.75 0.0 3.1e-05
GO:0034645 cellular macromolecule biosynthetic process 13.79% (8/58) 3.25 2e-06 0.000178
GO:0016070 RNA metabolic process 12.07% (7/58) 3.36 5e-06 0.000206
GO:0009059 macromolecule biosynthetic process 13.79% (8/58) 3.12 4e-06 0.000231
GO:0044271 cellular nitrogen compound biosynthetic process 13.79% (8/58) 3.06 5e-06 0.000236
GO:0032259 methylation 5.17% (3/58) 5.89 1.7e-05 0.000568
GO:0090304 nucleic acid metabolic process 12.07% (7/58) 2.9 4.1e-05 0.001138
GO:0003676 nucleic acid binding 18.97% (11/58) 2.06 5.2e-05 0.001271
GO:0001510 RNA methylation 3.45% (2/58) 7.24 7.1e-05 0.001547
GO:0043228 non-membrane-bounded organelle 8.62% (5/58) 3.3 0.000156 0.001607
GO:0043232 intracellular non-membrane-bounded organelle 8.62% (5/58) 3.3 0.000156 0.001607
GO:0043604 amide biosynthetic process 8.62% (5/58) 3.4 0.000111 0.001679
GO:0006518 peptide metabolic process 8.62% (5/58) 3.4 0.000111 0.001679
GO:0006139 nucleobase-containing compound metabolic process 12.07% (7/58) 2.56 0.000174 0.001704
GO:0034660 ncRNA metabolic process 6.9% (4/58) 3.98 0.000122 0.001706
GO:0043043 peptide biosynthetic process 8.62% (5/58) 3.44 9.8e-05 0.001737
GO:1990904 ribonucleoprotein complex 8.62% (5/58) 3.3 0.000153 0.00176
GO:0006412 translation 8.62% (5/58) 3.46 9.1e-05 0.001786
GO:0043603 cellular amide metabolic process 8.62% (5/58) 3.34 0.000138 0.0018
GO:0044249 cellular biosynthetic process 13.79% (8/58) 2.37 0.000147 0.001804
GO:1901576 organic substance biosynthetic process 13.79% (8/58) 2.28 0.000218 0.002039
GO:0034470 ncRNA processing 5.17% (3/58) 4.6 0.000258 0.002302
GO:0006725 cellular aromatic compound metabolic process 12.07% (7/58) 2.41 0.000334 0.002727
GO:0046483 heterocycle metabolic process 12.07% (7/58) 2.41 0.000331 0.002817
GO:1901360 organic cyclic compound metabolic process 12.07% (7/58) 2.36 0.000403 0.003157
GO:0043170 macromolecule metabolic process 22.41% (13/58) 1.47 0.000594 0.003636
GO:0043414 macromolecule methylation 3.45% (2/58) 5.83 0.00056 0.003661
GO:0044260 cellular macromolecule metabolic process 18.97% (11/58) 1.66 0.000592 0.003744
GO:0009058 biosynthetic process 13.79% (8/58) 2.08 0.000556 0.003755
GO:0006351 transcription, DNA-templated 5.17% (3/58) 4.26 0.00052 0.003777
GO:0097659 nucleic acid-templated transcription 5.17% (3/58) 4.26 0.00052 0.003777
GO:0140098 catalytic activity, acting on RNA 6.9% (4/58) 3.41 0.000553 0.003872
GO:0006364 rRNA processing 3.45% (2/58) 5.66 0.000712 0.004107
GO:0016072 rRNA metabolic process 3.45% (2/58) 5.66 0.000712 0.004107
GO:0043229 intracellular organelle 10.34% (6/58) 2.41 0.000918 0.005
GO:0043226 organelle 10.34% (6/58) 2.41 0.000918 0.005
GO:0005840 ribosome 6.9% (4/58) 3.15 0.001087 0.00576
GO:0003735 structural constituent of ribosome 6.9% (4/58) 3.13 0.001127 0.005814
GO:0044424 intracellular part 13.79% (8/58) 1.92 0.001159 0.005823
GO:0006807 nitrogen compound metabolic process 22.41% (13/58) 1.36 0.001217 0.005964
GO:0005198 structural molecule activity 6.9% (4/58) 3.07 0.001341 0.006258
GO:1901566 organonitrogen compound biosynthetic process 8.62% (5/58) 2.62 0.001324 0.006327
GO:0044237 cellular metabolic process 22.41% (13/58) 1.32 0.00157 0.007157
GO:0032774 RNA biosynthetic process 5.17% (3/58) 3.67 0.001709 0.007442
GO:1901363 heterocyclic compound binding 27.59% (16/58) 1.12 0.001797 0.007495
GO:0097159 organic cyclic compound binding 27.59% (16/58) 1.12 0.001797 0.007495
GO:0044464 cell part 13.79% (8/58) 1.83 0.001701 0.007578
GO:0044444 cytoplasmic part 8.62% (5/58) 2.5 0.001904 0.007775
GO:0016435 rRNA (guanine) methyltransferase activity 1.72% (1/58) 8.83 0.002201 0.007845
GO:0000154 rRNA modification 1.72% (1/58) 8.83 0.002201 0.007845
GO:0070475 rRNA base methylation 1.72% (1/58) 8.83 0.002201 0.007845
GO:0036265 RNA (guanine-N7)-methylation 1.72% (1/58) 8.83 0.002201 0.007845
GO:0031167 rRNA methylation 1.72% (1/58) 8.83 0.002201 0.007845
GO:0070476 rRNA (guanine-N7)-methylation 1.72% (1/58) 8.83 0.002201 0.007845
GO:0006396 RNA processing 5.17% (3/58) 3.59 0.001997 0.007987
GO:0032991 protein-containing complex 10.34% (6/58) 2.14 0.002321 0.008122
GO:0009451 RNA modification 3.45% (2/58) 4.78 0.002407 0.008277
GO:0034708 methyltransferase complex 1.72% (1/58) 7.83 0.004398 0.013683
GO:0008649 rRNA methyltransferase activity 1.72% (1/58) 7.83 0.004398 0.013683
GO:0030488 tRNA methylation 1.72% (1/58) 7.83 0.004398 0.013683
GO:0031515 tRNA (m1A) methyltransferase complex 1.72% (1/58) 7.83 0.004398 0.013683
GO:0043527 tRNA methyltransferase complex 1.72% (1/58) 7.83 0.004398 0.013683
GO:0140102 catalytic activity, acting on a rRNA 1.72% (1/58) 7.83 0.004398 0.013683
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 3.45% (2/58) 4.21 0.005241 0.016052
GO:0097747 RNA polymerase activity 3.45% (2/58) 4.07 0.006333 0.018808
GO:0034062 5'-3' RNA polymerase activity 3.45% (2/58) 4.07 0.006333 0.018808
GO:0030145 manganese ion binding 1.72% (1/58) 7.24 0.00659 0.019279
GO:0034654 nucleobase-containing compound biosynthetic process 5.17% (3/58) 2.89 0.007803 0.022491
GO:0005488 binding 36.21% (21/58) 0.72 0.00963 0.027356
GO:0008238 exopeptidase activity 3.45% (2/58) 3.74 0.009885 0.027679
GO:0009987 cellular process 22.41% (13/58) 1.01 0.01028 0.02838
GO:0032040 small-subunit processome 1.72% (1/58) 6.51 0.01096 0.029029
GO:0005730 nucleolus 1.72% (1/58) 6.51 0.01096 0.029029
GO:0044238 primary metabolic process 22.41% (13/58) 1.0 0.010884 0.029627
GO:0004177 aminopeptidase activity 1.72% (1/58) 6.24 0.013138 0.034333
GO:0019438 aromatic compound biosynthetic process 5.17% (3/58) 2.6 0.013434 0.034645
GO:0008168 methyltransferase activity 5.17% (3/58) 2.58 0.013916 0.035423
GO:0018130 heterocycle biosynthetic process 5.17% (3/58) 2.56 0.014409 0.036206
GO:0071704 organic substance metabolic process 22.41% (13/58) 0.94 0.0147 0.036471
GO:0030684 preribosome 1.72% (1/58) 6.02 0.015311 0.037048
GO:0016741 transferase activity, transferring one-carbon groups 5.17% (3/58) 2.53 0.015251 0.037365
GO:1901362 organic cyclic compound biosynthetic process 5.17% (3/58) 2.42 0.018704 0.044706
GO:0006399 tRNA metabolic process 3.45% (2/58) 3.24 0.019027 0.044931
GO:0016779 nucleotidyltransferase activity 3.45% (2/58) 3.21 0.019777 0.046146
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.043 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_109 0.033 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.031 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.075 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.048 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_202 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.071 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_247 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_263 0.036 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_55 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.049 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.029 Archaeplastida Compare
Gingko biloba HCCA Cluster_309 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.058 Archaeplastida Compare
Zea mays HCCA Cluster_329 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.032 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.028 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.036 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.06 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_166 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_87 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.042 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.058 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_176 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.062 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.044 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.031 Archaeplastida Compare
Picea abies HCCA Cluster_399 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_427 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_469 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_530 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_540 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.058 Archaeplastida Compare
Oryza sativa HCCA Cluster_140 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_168 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.038 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_297 0.036 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.035 Archaeplastida Compare
Oryza sativa HCCA Cluster_350 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_82 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_185 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_195 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_209 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.08 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_159 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.084 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_215 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_219 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_222 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_277 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.025 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.075 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_87 0.025 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_118 0.019 Archaeplastida Compare
Sequences (58) (download table)

InterPro Domains

GO Terms

Family Terms