AT3G10270 (GYRB1)


Aliases : GYRB1

Description : DNA GYRASE B1


Gene families : OG0005317 (Archaeplastida) Phylogenetic Tree(s): OG0005317_tree ,
OG_05_0005972 (LandPlants) Phylogenetic Tree(s): OG_05_0005972_tree ,
OG_06_0006890 (SeedPlants) Phylogenetic Tree(s): OG_06_0006890_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G10270
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033639001 No alias Cell cycle.organelle machineries.DNA replication.DNA... 0.02 Archaeplastida
Gb_13262 No alias DNA gyrase subunit B, chloroplastic/mitochondrial... 0.02 Archaeplastida
Mp1g20620.1 No alias subunit B of DNA gyrase complex 0.03 Archaeplastida
Pp3c22_3710V3.1 No alias DNA GYRASE B2 0.02 Archaeplastida
Smo405784 No alias Cell cycle.organelle machineries.DNA replication.DNA... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity ISS Interproscan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IBA Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0006259 DNA metabolic process ISS Interproscan
BP GO:0006261 DNA-dependent DNA replication IBA Interproscan
BP GO:0006265 DNA topological change ISS Interproscan
BP GO:0006265 DNA topological change IBA Interproscan
BP GO:0007059 chromosome segregation IBA Interproscan
MF GO:0008094 DNA-dependent ATPase activity IBA Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) IBA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004825 methionine-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006546 glycine catabolic process IEP Neighborhood
BP GO:0006636 unsaturated fatty acid biosynthetic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0009071 serine family amino acid catabolic process IEP Neighborhood
BP GO:0009106 lipoate metabolic process IEP Neighborhood
BP GO:0009108 coenzyme biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009303 rRNA transcription IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009528 plastid inner membrane IEP Neighborhood
CC GO:0009532 plastid stroma IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
CC GO:0009570 chloroplast stroma IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009662 etioplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
CC GO:0009706 chloroplast inner membrane IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010020 chloroplast fission IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0010109 regulation of photosynthesis IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016108 tetraterpenoid metabolic process IEP Neighborhood
BP GO:0016109 tetraterpenoid biosynthetic process IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0016116 carotenoid metabolic process IEP Neighborhood
BP GO:0016117 carotenoid biosynthetic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019216 regulation of lipid metabolic process IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
CC GO:0031350 intrinsic component of plastid membrane IEP Neighborhood
CC GO:0031351 integral component of plastid membrane IEP Neighborhood
CC GO:0031352 intrinsic component of plastid inner membrane IEP Neighborhood
CC GO:0031353 integral component of plastid inner membrane IEP Neighborhood
CC GO:0031356 intrinsic component of chloroplast inner membrane IEP Neighborhood
CC GO:0031357 integral component of chloroplast inner membrane IEP Neighborhood
BP GO:0031407 oxylipin metabolic process IEP Neighborhood
BP GO:0031408 oxylipin biosynthetic process IEP Neighborhood
CC GO:0031897 Tic complex IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
BP GO:0032365 intracellular lipid transport IEP Neighborhood
BP GO:0033559 unsaturated fatty acid metabolic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0042135 neurotransmitter catabolic process IEP Neighborhood
CC GO:0042170 plastid membrane IEP Neighborhood
BP GO:0042181 ketone biosynthetic process IEP Neighborhood
BP GO:0042372 phylloquinone biosynthetic process IEP Neighborhood
BP GO:0042374 phylloquinone metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042548 regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0042550 photosystem I stabilization IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0042794 plastid rRNA transcription IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Neighborhood
BP GO:0043572 plastid fission IEP Neighborhood
MF GO:0043621 protein self-association IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046608 carotenoid isomerase activity IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
MF GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0098781 ncRNA transcription IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901661 quinone metabolic process IEP Neighborhood
BP GO:1901663 quinone biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 554 655
IPR003594 HATPase_C 126 273
IPR002288 DNA_gyrase_B_C 698 758
IPR013506 Topo_IIA_bsu_dom2 324 409
IPR013506 Topo_IIA_bsu_dom2 437 525
No external refs found!