AT5G43060

Description : Granulin repeat cysteine protease family protein

Gene families : OG0000108 (Archaeplastida) Phylogenetic Tree(s): OG0000108_tree ,
OG_05_0000044 (LandPlants) Phylogenetic Tree(s): OG_05_0000044_tree ,
OG_06_0000929 (SeedPlants) Phylogenetic Tree(s): OG_06_0000929_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G43060
Cluster	HCCA: Cluster_230

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00031000	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase...	0.04	Archaeplastida
AMTR_s00022p00165270	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.cysteine-type...	0.03	Archaeplastida
AMTR_s00022p00166050	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
GSVIVT01022063001	No alias	Cysteine proteinase RD21A OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_10444	No alias	protease (Papain)	0.02	Archaeplastida
Mp6g12320.1	No alias	Probable cysteine protease RD21B OS=Arabidopsis thaliana...	0.02	Archaeplastida
Mp8g12950.1	No alias	Cysteine proteinase RD21A OS=Arabidopsis thaliana...	0.03	Archaeplastida
Smo230602	No alias	Senescence-specific cysteine protease SAG39 OS=Oryza...	0.02	Archaeplastida
Solyc03g006210.2.1	No alias	Senescence-specific cysteine protease SAG39 OS=Oryza...	0.03	Archaeplastida
Zm00001e003949_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	ISS	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0052541	plant-type cell wall cellulose metabolic process	RCA	Interproscan
BP	GO:0052546	cell wall pectin metabolic process	RCA	Interproscan
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0000104	succinate dehydrogenase activity	IEP	Neighborhood
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
BP	GO:0001932	regulation of protein phosphorylation	IEP	Neighborhood
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004163	diphosphomevalonate decarboxylase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004351	glutamate decarboxylase activity	IEP	Neighborhood
MF	GO:0004738	pyruvate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity	IEP	Neighborhood
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Neighborhood
BP	GO:0005996	monosaccharide metabolic process	IEP	Neighborhood
BP	GO:0006085	acetyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0006121	mitochondrial electron transport, succinate to ubiquinone	IEP	Neighborhood
BP	GO:0006469	negative regulation of protein kinase activity	IEP	Neighborhood
BP	GO:0006470	protein dephosphorylation	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006722	triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006732	coenzyme metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0007033	vacuole organization	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
BP	GO:0009108	coenzyme biosynthetic process	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009735	response to cytokinin	IEP	Neighborhood
BP	GO:0009743	response to carbohydrate	IEP	Neighborhood
BP	GO:0009744	response to sucrose	IEP	Neighborhood
BP	GO:0009746	response to hexose	IEP	Neighborhood
BP	GO:0009749	response to glucose	IEP	Neighborhood
BP	GO:0009750	response to fructose	IEP	Neighborhood
BP	GO:0009804	coumarin metabolic process	IEP	Neighborhood
BP	GO:0009805	coumarin biosynthetic process	IEP	Neighborhood
BP	GO:0010017	red or far-red light signaling pathway	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0010119	regulation of stomatal movement	IEP	Neighborhood
BP	GO:0010161	red light signaling pathway	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
MF	GO:0010174	nucleoside transmembrane transporter activity, against a concentration gradient	IEP	Neighborhood
BP	GO:0010359	regulation of anion channel activity	IEP	Neighborhood
BP	GO:0010422	regulation of brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	Neighborhood
BP	GO:0010942	positive regulation of cell death	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016104	triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
BP	GO:0016540	protein autoprocessing	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
BP	GO:0019216	regulation of lipid metabolic process	IEP	Neighborhood
BP	GO:0019218	regulation of steroid metabolic process	IEP	Neighborhood
BP	GO:0019287	isopentenyl diphosphate biosynthetic process, mevalonate pathway	IEP	Neighborhood
BP	GO:0019742	pentacyclic triterpenoid metabolic process	IEP	Neighborhood
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0019852	L-ascorbic acid metabolic process	IEP	Neighborhood
BP	GO:0019853	L-ascorbic acid biosynthetic process	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030865	cortical cytoskeleton organization	IEP	Neighborhood
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Neighborhood
BP	GO:0031400	negative regulation of protein modification process	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032409	regulation of transporter activity	IEP	Neighborhood
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0033549	MAP kinase phosphatase activity	IEP	Neighborhood
BP	GO:0033673	negative regulation of kinase activity	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034284	response to monosaccharide	IEP	Neighborhood
BP	GO:0034285	response to disaccharide	IEP	Neighborhood
BP	GO:0035384	thioester biosynthetic process	IEP	Neighborhood
BP	GO:0035966	response to topologically incorrect protein	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042325	regulation of phosphorylation	IEP	Neighborhood
BP	GO:0042326	negative regulation of phosphorylation	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042752	regulation of circadian rhythm	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
BP	GO:0043068	positive regulation of programmed cell death	IEP	Neighborhood
BP	GO:0043086	negative regulation of catalytic activity	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
BP	GO:0043405	regulation of MAP kinase activity	IEP	Neighborhood
BP	GO:0043407	negative regulation of MAP kinase activity	IEP	Neighborhood
BP	GO:0043408	regulation of MAPK cascade	IEP	Neighborhood
BP	GO:0043409	negative regulation of MAPK cascade	IEP	Neighborhood
BP	GO:0043549	regulation of kinase activity	IEP	Neighborhood
BP	GO:0043622	cortical microtubule organization	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044070	regulation of anion transport	IEP	Neighborhood
CC	GO:0045281	succinate dehydrogenase complex	IEP	Neighborhood
BP	GO:0045859	regulation of protein kinase activity	IEP	Neighborhood
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
MF	GO:0050105	L-gulonolactone oxidase activity	IEP	Neighborhood
BP	GO:0050810	regulation of steroid biosynthetic process	IEP	Neighborhood
MF	GO:0050897	cobalt ion binding	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051338	regulation of transferase activity	IEP	Neighborhood
BP	GO:0051348	negative regulation of transferase activity	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051788	response to misfolded protein	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
BP	GO:0071489	cellular response to red or far red light	IEP	Neighborhood
BP	GO:0071491	cellular response to red light	IEP	Neighborhood
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0071901	negative regulation of protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0090030	regulation of steroid hormone biosynthetic process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098803	respiratory chain complex	IEP	Neighborhood
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1903959	regulation of anion transmembrane transport	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013201	Prot_inhib_I29	50	110
IPR000668	Peptidase_C1A_C	138	353
IPR000118	Granulin	387	434

External Links

No external refs found!

AT5G43060

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation