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  5. AT1G06820

AT1G06820 (CRTISO, CCR2)


Aliases : CRTISO, CCR2

Description : carotenoid isomerase


Gene families : OG0005635 (Archaeplastida) Phylogenetic Tree(s): OG0005635_tree ,
OG_05_0006499 (LandPlants) Phylogenetic Tree(s): OG_05_0006499_tree ,
OG_06_0007308 (SeedPlants) Phylogenetic Tree(s): OG_06_0007308_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G06820
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001095.9 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre16.g651923 No alias Secondary metabolism.terpenoids.terpenoid... 0.02 Archaeplastida
LOC_Os11g36440.1 No alias carotenoid isomerase (CrtISO) 0.04 Archaeplastida
Mp5g24430.1 No alias carotenoid isomerase (CrtISO) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast IBA Interproscan
CC GO:0009507 chloroplast TAS Interproscan
BP GO:0009662 etioplast organization IMP Interproscan
BP GO:0016117 carotenoid biosynthetic process IGI Interproscan
BP GO:0016117 carotenoid biosynthetic process TAS Interproscan
MF GO:0046608 carotenoid isomerase activity IMP Interproscan
MF GO:0046608 carotenoid isomerase activity IGI Interproscan
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Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004614 phosphoglucomutase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004825 methionine-tRNA ligase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0005982 starch metabolic process IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006012 galactose metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006874 cellular calcium ion homeostasis IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008252 nucleotidase activity IEP Neighborhood
MF GO:0008253 5'-nucleotidase activity IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
CC GO:0009295 nucleoid IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009528 plastid inner membrane IEP Neighborhood
CC GO:0009532 plastid stroma IEP Neighborhood
CC GO:0009534 chloroplast thylakoid IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
CC GO:0009570 chloroplast stroma IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009590 detection of gravity IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
CC GO:0009706 chloroplast inner membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
MF GO:0009974 zeinoxanthin epsilon hydroxylase activity IEP Neighborhood
BP GO:0010020 chloroplast fission IEP Neighborhood
BP GO:0010021 amylopectin biosynthetic process IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0010103 stomatal complex morphogenesis IEP Neighborhood
CC GO:0010319 stromule IEP Neighborhood
CC GO:0010368 chloroplast isoamylase complex IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019156 isoamylase activity IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
BP GO:0019252 starch biosynthetic process IEP Neighborhood
BP GO:0019255 glucose 1-phosphate metabolic process IEP Neighborhood
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Neighborhood
BP GO:0019388 galactose catabolic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031304 intrinsic component of mitochondrial inner membrane IEP Neighborhood
CC GO:0031312 extrinsic component of organelle membrane IEP Neighborhood
CC GO:0031897 Tic complex IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
CC GO:0031976 plastid thylakoid IEP Neighborhood
BP GO:0032365 intracellular lipid transport IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0035452 extrinsic component of plastid membrane IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042170 plastid membrane IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0042780 tRNA 3'-end processing IEP Neighborhood
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP Neighborhood
CC GO:0043033 isoamylase complex IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043572 plastid fission IEP Neighborhood
MF GO:0043621 protein self-association IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
BP GO:0045037 protein import into chloroplast stroma IEP Neighborhood
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Neighborhood
BP GO:0048481 plant ovule development IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0055074 calcium ion homeostasis IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0065002 intracellular protein transmembrane transport IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071806 protein transmembrane transport IEP Neighborhood
MF GO:0072374 carotene epsilon hydroxylase activity IEP Neighborhood
BP GO:0072503 cellular divalent inorganic cation homeostasis IEP Neighborhood
BP GO:0072507 divalent inorganic cation homeostasis IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
CC GO:0080085 signal recognition particle, chloroplast targeting IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090626 plant epidermis morphogenesis IEP Neighborhood
BP GO:0090698 post-embryonic plant morphogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1900865 chloroplast RNA modification IEP Neighborhood
BP GO:1900871 chloroplast mRNA modification IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:2000896 amylopectin metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 87 567
No external refs found!