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  5. AT4G39820

AT4G39820


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0006259 (Archaeplastida) Phylogenetic Tree(s): OG0006259_tree ,
OG_05_0006958 (LandPlants) Phylogenetic Tree(s): OG_05_0006958_tree ,
OG_06_0010482 (SeedPlants) Phylogenetic Tree(s): OG_06_0010482_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G39820
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
Gb_15408 No alias component TRAPPC12 of TRAPP complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000060 protein import into nucleus, translocation IEP Neighborhood
MF GO:0000062 fatty-acyl-CoA binding IEP Neighborhood
MF GO:0000104 succinate dehydrogenase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0000302 response to reactive oxygen species IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003756 protein disulfide isomerase activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004619 phosphoglycerate mutase activity IEP Neighborhood
MF GO:0004817 cysteine-tRNA ligase activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
CC GO:0005740 mitochondrial envelope IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEP Neighborhood
CC GO:0005750 mitochondrial respiratory chain complex III IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
CC GO:0005788 endoplasmic reticulum lumen IEP Neighborhood
CC GO:0005794 Golgi apparatus IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006007 glucose catabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006096 glycolytic process IEP Neighborhood
BP GO:0006121 mitochondrial electron transport, succinate to ubiquinone IEP Neighborhood
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Neighborhood
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006491 N-glycan processing IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006498 N-terminal protein lipidation IEP Neighborhood
BP GO:0006499 N-terminal protein myristoylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Neighborhood
BP GO:0006757 ATP generation from ADP IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0006984 ER-nucleus signaling pathway IEP Neighborhood
BP GO:0007276 gamete generation IEP Neighborhood
BP GO:0007292 female gamete generation IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0008446 GDP-mannose 4,6-dehydratase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009100 glycoprotein metabolic process IEP Neighborhood
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009166 nucleotide catabolic process IEP Neighborhood
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Neighborhood
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009408 response to heat IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009627 systemic acquired resistance IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009636 response to toxic substance IEP Neighborhood
BP GO:0009642 response to light intensity IEP Neighborhood
BP GO:0009644 response to high light intensity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0009814 defense response, incompatible interaction IEP Neighborhood
BP GO:0009853 photorespiration IEP Neighborhood
BP GO:0009900 dehiscence IEP Neighborhood
BP GO:0009901 anther dehiscence IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
BP GO:0010078 maintenance of root meristem identity IEP Neighborhood
BP GO:0010197 polar nucleus fusion IEP Neighborhood
MF GO:0010427 abscisic acid binding IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018377 protein myristoylation IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019320 hexose catabolic process IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019362 pyridine nucleotide metabolic process IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
MF GO:0019840 isoprenoid binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0030427 site of polarized growth IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031520 plasma membrane of cell tip IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032957 inositol trisphosphate metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Neighborhood
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Neighborhood
MF GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034976 response to endoplasmic reticulum stress IEP Neighborhood
BP GO:0035266 meristem growth IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0035838 growing cell tip IEP Neighborhood
BP GO:0035966 response to topologically incorrect protein IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
CC GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042350 GDP-L-fucose biosynthetic process IEP Neighborhood
BP GO:0042351 'de novo' GDP-L-fucose biosynthetic process IEP Neighborhood
BP GO:0042542 response to hydrogen peroxide IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
BP GO:0042732 D-xylose metabolic process IEP Neighborhood
BP GO:0042866 pyruvate biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043178 alcohol binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
MF GO:0043812 phosphatidylinositol-4-phosphate phosphatase activity IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044463 cell projection part IEP Neighborhood
CC GO:0045257 succinate dehydrogenase complex (ubiquinone) IEP Neighborhood
CC GO:0045275 respiratory chain complex III IEP Neighborhood
CC GO:0045281 succinate dehydrogenase complex IEP Neighborhood
CC GO:0045283 fumarate reductase complex IEP Neighborhood
MF GO:0045309 protein phosphorylated amino acid binding IEP Neighborhood
BP GO:0046031 ADP metabolic process IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046365 monosaccharide catabolic process IEP Neighborhood
BP GO:0046368 GDP-L-fucose metabolic process IEP Neighborhood
BP GO:0046434 organophosphate catabolic process IEP Neighborhood
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Neighborhood
MF GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEP Neighborhood
BP GO:0046677 response to antibiotic IEP Neighborhood
BP GO:0046686 response to cadmium ion IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
BP GO:0046939 nucleotide phosphorylation IEP Neighborhood
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048232 male gamete generation IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048768 root hair cell tip growth IEP Neighborhood
BP GO:0048829 root cap development IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
MF GO:0051219 phosphoprotein binding IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
CC GO:0051286 cell tip IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051788 response to misfolded protein IEP Neighborhood
BP GO:0052031 modulation by symbiont of host defense response IEP Neighborhood
BP GO:0052033 pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response IEP Neighborhood
BP GO:0052166 positive regulation by symbiont of host innate immune response IEP Neighborhood
BP GO:0052167 modulation by symbiont of host innate immune response IEP Neighborhood
BP GO:0052169 pathogen-associated molecular pattern dependent modulation by symbiont of host innate immune response IEP Neighborhood
BP GO:0052173 response to defenses of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052200 response to host defenses IEP Neighborhood
BP GO:0052255 modulation by organism of defense response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052257 pathogen-associated molecular pattern dependent induction by organism of innate immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052305 positive regulation by organism of innate immune response in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052306 modulation by organism of innate immune response in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052308 pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052509 positive regulation by symbiont of host defense response IEP Neighborhood
BP GO:0052510 positive regulation by organism of defense response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Neighborhood
BP GO:0052552 modulation by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052553 modulation by symbiont of host immune response IEP Neighborhood
BP GO:0052555 positive regulation by organism of immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052556 positive regulation by symbiont of host immune response IEP Neighborhood
BP GO:0052564 response to immune response of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052572 response to host immune response IEP Neighborhood
MF GO:0052744 phosphatidylinositol monophosphate phosphatase activity IEP Neighborhood
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072524 pyridine-containing compound metabolic process IEP Neighborhood
BP GO:0075136 response to host IEP Neighborhood
BP GO:0080129 proteasome core complex assembly IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
CC GO:0090404 pollen tube tip IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098590 plasma membrane region IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098803 respiratory chain complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0106019 phosphatidylinositol-4,5-bisphosphate phosphatase activity IEP Neighborhood
CC GO:0120038 plasma membrane bounded cell projection part IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901292 nucleoside phosphate catabolic process IEP Neighborhood
MF GO:1901567 fatty acid derivative binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!