Coexpression cluster: Cluster_427 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0017150 tRNA dihydrouridine synthase activity 2.0% (2/100) 7.8 3.3e-05 0.005164
GO:1901360 organic cyclic compound metabolic process 8.0% (8/100) 2.62 5.2e-05 0.005335
GO:0008033 tRNA processing 3.0% (3/100) 5.92 1.7e-05 0.005368
GO:0046483 heterocycle metabolic process 7.0% (7/100) 2.55 0.000207 0.007131
GO:0034470 ncRNA processing 3.0% (3/100) 5.11 9.5e-05 0.007386
GO:0098805 whole membrane 2.0% (2/100) 6.57 0.000201 0.007771
GO:0031968 organelle outer membrane 2.0% (2/100) 6.57 0.000201 0.007771
GO:0005741 mitochondrial outer membrane 2.0% (2/100) 6.57 0.000201 0.007771
GO:1901362 organic cyclic compound biosynthetic process 5.0% (5/100) 3.1 0.000312 0.009677
GO:0019867 outer membrane 2.0% (2/100) 6.06 0.000416 0.009926
GO:0098588 bounding membrane of organelle 2.0% (2/100) 6.13 0.000375 0.010568
GO:0006399 tRNA metabolic process 3.0% (3/100) 4.4 0.000411 0.010609
GO:0046434 organophosphate catabolic process 3.0% (3/100) 4.8 0.000181 0.011248
GO:0006807 nitrogen compound metabolic process 14.0% (14/100) 1.4 0.000825 0.01278
GO:0072330 monocarboxylic acid biosynthetic process 3.0% (3/100) 4.12 0.000717 0.013071
GO:0034660 ncRNA metabolic process 3.0% (3/100) 4.06 0.000811 0.013231
GO:0044283 small molecule biosynthetic process 4.0% (4/100) 3.29 0.000794 0.013671
GO:0006139 nucleobase-containing compound metabolic process 6.0% (6/100) 2.5 0.000711 0.013773
GO:0031966 mitochondrial membrane 2.0% (2/100) 5.68 0.000708 0.014629
GO:0003690 double-stranded DNA binding 3.0% (3/100) 3.93 0.001045 0.014721
GO:0031090 organelle membrane 2.0% (2/100) 5.43 0.001008 0.014878
GO:0019206 nucleoside kinase activity 1.0% (1/100) 9.38 0.001501 0.015008
GO:0019136 deoxynucleoside kinase activity 1.0% (1/100) 9.38 0.001501 0.015008
GO:0008531 riboflavin kinase activity 1.0% (1/100) 9.38 0.001501 0.015008
GO:0004797 thymidine kinase activity 1.0% (1/100) 9.38 0.001501 0.015008
GO:0018130 heterocycle biosynthetic process 4.0% (4/100) 3.1 0.001269 0.015126
GO:0006725 cellular aromatic compound metabolic process 6.0% (6/100) 2.28 0.001565 0.015162
GO:0006396 RNA processing 3.0% (3/100) 3.85 0.001239 0.015362
GO:0071704 organic substance metabolic process 17.0% (17/100) 1.25 0.000704 0.01558
GO:0044238 primary metabolic process 16.0% (16/100) 1.23 0.001211 0.015643
GO:0032787 monocarboxylic acid metabolic process 3.0% (3/100) 3.88 0.001164 0.015684
GO:0034641 cellular nitrogen compound metabolic process 7.0% (7/100) 2.09 0.001374 0.015778
GO:0044429 mitochondrial part 2.0% (2/100) 5.02 0.00176 0.016533
GO:0046939 nucleotide phosphorylation 2.0% (2/100) 4.74 0.002606 0.016832
GO:0046031 ADP metabolic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0009135 purine nucleoside diphosphate metabolic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0042866 pyruvate biosynthetic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0009179 purine ribonucleoside diphosphate metabolic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0009166 nucleotide catabolic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0006096 glycolytic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0009185 ribonucleoside diphosphate metabolic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0006165 nucleoside diphosphate phosphorylation 2.0% (2/100) 4.74 0.002606 0.016832
GO:0006757 ATP generation from ADP 2.0% (2/100) 4.74 0.002606 0.016832
GO:0009132 nucleoside diphosphate metabolic process 2.0% (2/100) 4.74 0.002606 0.016832
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors 2.0% (2/100) 4.95 0.001934 0.017637
GO:0006090 pyruvate metabolic process 2.0% (2/100) 4.65 0.002923 0.018494
GO:0019205 nucleobase-containing compound kinase activity 1.0% (1/100) 8.38 0.002999 0.018596
GO:1901292 nucleoside phosphate catabolic process 2.0% (2/100) 4.6 0.003144 0.019111
GO:0016070 RNA metabolic process 4.0% (4/100) 2.86 0.00232 0.019435
GO:0044281 small molecule metabolic process 5.0% (5/100) 2.46 0.002267 0.019519
GO:0009058 biosynthetic process 7.0% (7/100) 1.96 0.002214 0.019609
GO:0072525 pyridine-containing compound biosynthetic process 2.0% (2/100) 4.52 0.003489 0.019668
GO:0034404 nucleobase-containing small molecule biosynthetic process 2.0% (2/100) 4.52 0.003489 0.019668
GO:0019359 nicotinamide nucleotide biosynthetic process 2.0% (2/100) 4.55 0.003372 0.019726
GO:0019363 pyridine nucleotide biosynthetic process 2.0% (2/100) 4.55 0.003372 0.019726
GO:0009123 nucleoside monophosphate metabolic process 2.0% (2/100) 4.11 0.006064 0.019786
GO:0009167 purine ribonucleoside monophosphate metabolic process 2.0% (2/100) 4.11 0.006064 0.019786
GO:0009161 ribonucleoside monophosphate metabolic process 2.0% (2/100) 4.11 0.006064 0.019786
GO:0009126 purine nucleoside monophosphate metabolic process 2.0% (2/100) 4.11 0.006064 0.019786
GO:0017144 drug metabolic process 3.0% (3/100) 3.31 0.003576 0.019797
GO:0008023 transcription elongation factor complex 1.0% (1/100) 7.38 0.00599 0.020405
GO:0006368 transcription elongation from RNA polymerase II promoter 1.0% (1/100) 7.38 0.00599 0.020405
GO:0006354 DNA-templated transcription, elongation 1.0% (1/100) 7.38 0.00599 0.020405
GO:0004347 glucose-6-phosphate isomerase activity 1.0% (1/100) 7.38 0.00599 0.020405
GO:0016052 carbohydrate catabolic process 2.0% (2/100) 4.08 0.006372 0.020577
GO:0046390 ribose phosphate biosynthetic process 2.0% (2/100) 4.02 0.006849 0.020815
GO:0009260 ribonucleotide biosynthetic process 2.0% (2/100) 4.02 0.006849 0.020815
GO:0009152 purine ribonucleotide biosynthetic process 2.0% (2/100) 4.02 0.006849 0.020815
GO:0072524 pyridine-containing compound metabolic process 2.0% (2/100) 4.4 0.004103 0.02085
GO:0006733 oxidoreduction coenzyme metabolic process 2.0% (2/100) 4.4 0.004103 0.02085
GO:0046496 nicotinamide nucleotide metabolic process 2.0% (2/100) 4.43 0.003976 0.020893
GO:0019362 pyridine nucleotide metabolic process 2.0% (2/100) 4.43 0.003976 0.020893
GO:0009141 nucleoside triphosphate metabolic process 2.0% (2/100) 4.04 0.006688 0.020943
GO:0046700 heterocycle catabolic process 2.0% (2/100) 4.04 0.006688 0.020943
GO:0044270 cellular nitrogen compound catabolic process 2.0% (2/100) 4.04 0.006688 0.020943
GO:1901576 organic substance biosynthetic process 6.0% (6/100) 1.88 0.005977 0.021297
GO:0019439 aromatic compound catabolic process 2.0% (2/100) 3.99 0.007175 0.021387
GO:1901361 organic cyclic compound catabolic process 2.0% (2/100) 3.99 0.007175 0.021387
GO:0044237 cellular metabolic process 13.0% (13/100) 1.21 0.003947 0.021468
GO:0140101 catalytic activity, acting on a tRNA 2.0% (2/100) 3.97 0.007341 0.021468
GO:0120013 intermembrane lipid transfer activity 1.0% (1/100) 7.06 0.007482 0.021475
GO:0120009 intermembrane lipid transfer 1.0% (1/100) 7.06 0.007482 0.021475
GO:0006508 proteolysis 4.0% (4/100) 2.48 0.005966 0.021506
GO:1901575 organic substance catabolic process 3.0% (3/100) 2.93 0.00734 0.021671
GO:1901564 organonitrogen compound metabolic process 11.0% (11/100) 1.27 0.005944 0.021677
GO:0009205 purine ribonucleoside triphosphate metabolic process 2.0% (2/100) 4.13 0.005912 0.021818
GO:0009144 purine nucleoside triphosphate metabolic process 2.0% (2/100) 4.13 0.005912 0.021818
GO:0009199 ribonucleoside triphosphate metabolic process 2.0% (2/100) 4.13 0.005912 0.021818
GO:0019637 organophosphate metabolic process 3.0% (3/100) 3.2 0.004367 0.021835
GO:0006754 ATP biosynthetic process 2.0% (2/100) 4.25 0.005039 0.022001
GO:0009145 purine nucleoside triphosphate biosynthetic process 2.0% (2/100) 4.25 0.005039 0.022001
GO:0009142 nucleoside triphosphate biosynthetic process 2.0% (2/100) 4.25 0.005039 0.022001
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 2.0% (2/100) 4.25 0.005039 0.022001
GO:0009201 ribonucleoside triphosphate biosynthetic process 2.0% (2/100) 4.25 0.005039 0.022001
GO:0016593 Cdc73/Paf1 complex 1.0% (1/100) 7.8 0.004496 0.022121
GO:0070011 peptidase activity, acting on L-amino acid peptides 4.0% (4/100) 2.59 0.004575 0.022159
GO:0009156 ribonucleoside monophosphate biosynthetic process 2.0% (2/100) 4.17 0.005614 0.022311
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 2.0% (2/100) 4.17 0.005614 0.022311
GO:0009124 nucleoside monophosphate biosynthetic process 2.0% (2/100) 4.17 0.005614 0.022311
GO:0009127 purine nucleoside monophosphate biosynthetic process 2.0% (2/100) 4.17 0.005614 0.022311
GO:0006164 purine nucleotide biosynthetic process 2.0% (2/100) 3.92 0.007848 0.022321
GO:0006091 generation of precursor metabolites and energy 2.0% (2/100) 4.15 0.005762 0.02261
GO:0008152 metabolic process 19.0% (19/100) 0.89 0.005911 0.022624
GO:0008233 peptidase activity 4.0% (4/100) 2.53 0.005339 0.022675
GO:0009056 catabolic process 3.0% (3/100) 2.88 0.008048 0.02268
GO:0034654 nucleobase-containing compound biosynthetic process 3.0% (3/100) 3.05 0.005904 0.02288
GO:0046034 ATP metabolic process 2.0% (2/100) 4.19 0.005467 0.022903
GO:0034655 nucleobase-containing compound catabolic process 2.0% (2/100) 4.21 0.005323 0.022917
GO:0090304 nucleic acid metabolic process 4.0% (4/100) 2.34 0.008296 0.023168
GO:0072522 purine-containing compound biosynthetic process 2.0% (2/100) 3.87 0.008371 0.023171
GO:0016053 organic acid biosynthetic process 3.0% (3/100) 3.13 0.005009 0.023527
GO:0046394 carboxylic acid biosynthetic process 3.0% (3/100) 3.13 0.005009 0.023527
GO:0061024 membrane organization 1.0% (1/100) 6.8 0.008971 0.024184
GO:0008150 biological_process 25.0% (25/100) 0.69 0.008816 0.024185
GO:0009108 coenzyme biosynthetic process 2.0% (2/100) 3.83 0.00891 0.024228
GO:0043170 macromolecule metabolic process 11.0% (11/100) 1.18 0.009499 0.025385
GO:1901293 nucleoside phosphate biosynthetic process 2.0% (2/100) 3.68 0.010812 0.028404
GO:0009165 nucleotide biosynthetic process 2.0% (2/100) 3.68 0.010812 0.028404
GO:1901137 carbohydrate derivative biosynthetic process 2.0% (2/100) 3.63 0.011619 0.030267
GO:0009987 cellular process 14.0% (14/100) 0.97 0.011742 0.030335
GO:0051188 cofactor biosynthetic process 2.0% (2/100) 3.57 0.012451 0.031638
GO:0009150 purine ribonucleotide metabolic process 2.0% (2/100) 3.56 0.012663 0.031658
GO:0009259 ribonucleotide metabolic process 2.0% (2/100) 3.56 0.012663 0.031658
GO:0044271 cellular nitrogen compound biosynthetic process 4.0% (4/100) 2.17 0.012441 0.031875
GO:0019438 aromatic compound biosynthetic process 3.0% (3/100) 2.62 0.013232 0.032816
GO:0006163 purine nucleotide metabolic process 2.0% (2/100) 3.49 0.013969 0.034367
GO:0019693 ribose phosphate metabolic process 2.0% (2/100) 3.47 0.014192 0.034641
GO:0006732 coenzyme metabolic process 2.0% (2/100) 3.46 0.014416 0.034914
GO:0072521 purine-containing compound metabolic process 2.0% (2/100) 3.45 0.014642 0.035187
GO:0050660 flavin adenine dinucleotide binding 2.0% (2/100) 3.29 0.017966 0.040952
GO:0042726 flavin-containing compound metabolic process 1.0% (1/100) 5.8 0.017863 0.041018
GO:0005319 lipid transporter activity 1.0% (1/100) 5.8 0.017863 0.041018
GO:0009231 riboflavin biosynthetic process 1.0% (1/100) 5.8 0.017863 0.041018
GO:0006771 riboflavin metabolic process 1.0% (1/100) 5.8 0.017863 0.041018
GO:0042727 flavin-containing compound biosynthetic process 1.0% (1/100) 5.8 0.017863 0.041018
GO:0044249 cellular biosynthetic process 5.0% (5/100) 1.72 0.018541 0.041955
GO:0071545 inositol phosphate catabolic process 1.0% (1/100) 5.68 0.019337 0.042514
GO:0046855 inositol phosphate dephosphorylation 1.0% (1/100) 5.68 0.019337 0.042514
GO:0006869 lipid transport 1.0% (1/100) 5.68 0.019337 0.042514
GO:0046838 phosphorylated carbohydrate dephosphorylation 1.0% (1/100) 5.68 0.019337 0.042514
GO:0050662 coenzyme binding 3.0% (3/100) 2.45 0.017832 0.042522
GO:0009117 nucleotide metabolic process 2.0% (2/100) 3.23 0.019479 0.042525
GO:0043647 inositol phosphate metabolic process 1.0% (1/100) 5.57 0.020809 0.044798
GO:0006753 nucleoside phosphate metabolic process 2.0% (2/100) 3.18 0.02078 0.045047
GO:0090407 organophosphate biosynthetic process 2.0% (2/100) 3.15 0.021577 0.04613
GO:0046164 alcohol catabolic process 1.0% (1/100) 5.38 0.023747 0.048752
GO:0046174 polyol catabolic process 1.0% (1/100) 5.38 0.023747 0.048752
GO:1901616 organic hydroxy compound catabolic process 1.0% (1/100) 5.38 0.023747 0.048752
GO:0006082 organic acid metabolic process 3.0% (3/100) 2.3 0.023662 0.049562
GO:0019752 carboxylic acid metabolic process 3.0% (3/100) 2.3 0.023512 0.049584
GO:0043436 oxoacid metabolic process 3.0% (3/100) 2.3 0.023512 0.049584
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_5 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_17 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_31 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_38 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_68 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_179 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_233 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_56 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_144 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_213 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_257 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_8 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_171 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_192 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_239 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_247 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_276 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_4 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_111 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_131 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_168 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_14 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_191 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_273 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_9 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_181 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_257 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_341 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_345 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_451 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_454 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_500 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_540 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_157 0.046 Archaeplastida Compare
Oryza sativa HCCA Cluster_164 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_175 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_209 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_293 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_353 0.042 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_93 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_138 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_160 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_170 0.028 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_171 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_190 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_118 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_148 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_164 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_197 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_200 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_206 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_219 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_275 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_284 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_68 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_94 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_152 0.037 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_203 0.024 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_50 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.03 Archaeplastida Compare
Sequences (100) (download table)

InterPro Domains

GO Terms

Family Terms